Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ETT63_RS01790 Genome accession   NZ_CP035436
Coordinates   332553..333044 (+) Length   163 a.a.
NCBI ID   WP_002993238.1    Uniprot ID   A0A9X5LZM9
Organism   Streptococcus pyogenes strain emm89.14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 327553..338044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT63_RS01760 (ETT63_01760) - 328748..329248 (+) 501 WP_111674779.1 phosphatase PAP2 family protein -
  ETT63_RS01765 (ETT63_01765) trxA 329311..329643 (+) 333 WP_261750545.1 thioredoxin -
  ETT63_RS01770 (ETT63_01770) - 329689..330276 (-) 588 WP_020905446.1 helix-turn-helix domain-containing protein -
  ETT63_RS01775 (ETT63_01775) mutY 330453..331607 (-) 1155 WP_168389419.1 A/G-specific adenine glycosylase -
  ETT63_RS01780 (ETT63_01780) - 331775..332068 (+) 294 WP_002983113.1 hypothetical protein -
  ETT63_RS01785 (ETT63_01785) rpsF 332241..332531 (+) 291 WP_002983117.1 30S ribosomal protein S6 -
  ETT63_RS01790 (ETT63_01790) ssbA 332553..333044 (+) 492 WP_002993238.1 single-stranded DNA-binding protein Machinery gene
  ETT63_RS01795 (ETT63_01795) rpsR 333209..333448 (+) 240 WP_002983142.1 30S ribosomal protein S18 -
  ETT63_RS01800 (ETT63_01800) - 333579..334235 (-) 657 WP_002983144.1 DUF1129 domain-containing protein -
  ETT63_RS01805 (ETT63_01805) - 334368..335312 (-) 945 WP_011888617.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17995.78 Da        Isoelectric Point: 4.8894

>NTDB_id=341477 ETT63_RS01790 WP_002993238.1 332553..333044(+) (ssbA) [Streptococcus pyogenes strain emm89.14]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=341477 ETT63_RS01790 WP_002993238.1 332553..333044(+) (ssbA) [Streptococcus pyogenes strain emm89.14]
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAGCGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGCCAACCTGCTGAAAATTTAGCAAACTGGGCTAAAAAAGGTGCCTTGATCGGAATTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGGTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.621

100

0.626
  ssb Latilactobacillus sakei subsp. sakei 23K

59.302

100

0.626
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368

Multiple sequence alignment