Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   F4V31_RS08135 Genome accession   NZ_CP044162
Coordinates   1558957..1559508 (+) Length   183 a.a.
NCBI ID   WP_002865738.1    Uniprot ID   O69302
Organism   Campylobacter jejuni strain AR-0419     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1553957..1564508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V31_RS08100 - 1554147..1554572 (+) 426 WP_002777060.1 GNAT family N-acetyltransferase -
  F4V31_RS08105 - 1554636..1555256 (+) 621 WP_002858394.1 NAD(P)H-dependent oxidoreductase -
  F4V31_RS08110 - 1555256..1555861 (+) 606 WP_052821854.1 NAD(P)H-dependent oxidoreductase -
  F4V31_RS08115 pgsA 1555986..1556522 (+) 537 WP_002927232.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  F4V31_RS08120 rseP 1556519..1557625 (+) 1107 WP_002852927.1 RIP metalloprotease RseP -
  F4V31_RS08125 - 1557618..1558484 (+) 867 WP_002868637.1 VirK family antimicrobial peptide resistance protein -
  F4V31_RS08130 rpsF 1558571..1558948 (+) 378 WP_002865739.1 30S ribosomal protein S6 -
  F4V31_RS08135 ssb 1558957..1559508 (+) 552 WP_002865738.1 single-stranded DNA-binding protein Machinery gene
  F4V31_RS08140 rpsR 1559519..1559779 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  F4V31_RS08145 lon 1559840..1562215 (-) 2376 WP_002868636.1 endopeptidase La -
  F4V31_RS08150 - 1562232..1562879 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  F4V31_RS08155 fliW 1563040..1563429 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  F4V31_RS08160 proC 1563429..1564160 (+) 732 WP_002858388.1 pyrroline-5-carboxylate reductase Machinery gene
  F4V31_RS08165 ctsT 1564157..1564459 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20683.58 Da        Isoelectric Point: 5.0431

>NTDB_id=341278 F4V31_RS08135 WP_002865738.1 1558957..1559508(+) (ssb) [Campylobacter jejuni strain AR-0419]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQSP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=341278 F4V31_RS08135 WP_002865738.1 1558957..1559508(+) (ssb) [Campylobacter jejuni strain AR-0419]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAGAGAAACCAAAGCCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O69302

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.418

96.721

0.372
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361