Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ETL58_RS18485 Genome accession   NZ_CP035413
Coordinates   3532953..3533642 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain SRCM103629     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3527953..3538642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETL58_RS18450 (ETL58_18450) flgN 3528134..3528616 (-) 483 WP_014478127.1 flagellar protein FlgN -
  ETL58_RS18455 (ETL58_18455) flgM 3528632..3528898 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  ETL58_RS18460 (ETL58_18460) yvyF 3528979..3529398 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  ETL58_RS18465 (ETL58_18465) comFC 3529471..3530193 (-) 723 WP_033884179.1 comF operon protein ComFC Machinery gene
  ETL58_RS18470 (ETL58_18470) comFB 3530157..3530453 (-) 297 WP_014478130.1 late competence protein ComFB -
  ETL58_RS18475 (ETL58_18475) comFA 3530513..3531904 (-) 1392 WP_101172232.1 ATP-dependent helicase ComFA Machinery gene
  ETL58_RS18480 (ETL58_18480) fakBA 3532010..3532855 (-) 846 WP_003244125.1 DegV family protein -
  ETL58_RS18485 (ETL58_18485) degU 3532953..3533642 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ETL58_RS18490 (ETL58_18490) degS 3533725..3534882 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  ETL58_RS18495 (ETL58_18495) yvyE 3535099..3535752 (+) 654 WP_003227979.1 YigZ family protein -
  ETL58_RS18500 (ETL58_18500) tagV 3535752..3536927 (+) 1176 WP_029318786.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  ETL58_RS18505 (ETL58_18505) tagO 3537000..3538076 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=340825 ETL58_RS18485 WP_003219701.1 3532953..3533642(-) (degU) [Bacillus subtilis strain SRCM103629]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=340825 ETL58_RS18485 WP_003219701.1 3532953..3533642(-) (degU) [Bacillus subtilis strain SRCM103629]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment