Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ETL58_RS18475 Genome accession   NZ_CP035413
Coordinates   3530513..3531904 (-) Length   463 a.a.
NCBI ID   WP_101172232.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103629     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3525513..3536904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETL58_RS18440 (ETL58_18440) flgL 3525685..3526581 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  ETL58_RS18445 (ETL58_18445) flgK 3526592..3528115 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  ETL58_RS18450 (ETL58_18450) flgN 3528134..3528616 (-) 483 WP_014478127.1 flagellar protein FlgN -
  ETL58_RS18455 (ETL58_18455) flgM 3528632..3528898 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  ETL58_RS18460 (ETL58_18460) yvyF 3528979..3529398 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  ETL58_RS18465 (ETL58_18465) comFC 3529471..3530193 (-) 723 WP_033884179.1 comF operon protein ComFC Machinery gene
  ETL58_RS18470 (ETL58_18470) comFB 3530157..3530453 (-) 297 WP_014478130.1 late competence protein ComFB -
  ETL58_RS18475 (ETL58_18475) comFA 3530513..3531904 (-) 1392 WP_101172232.1 ATP-dependent helicase ComFA Machinery gene
  ETL58_RS18480 (ETL58_18480) fakBA 3532010..3532855 (-) 846 WP_003244125.1 DegV family protein -
  ETL58_RS18485 (ETL58_18485) degU 3532953..3533642 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ETL58_RS18490 (ETL58_18490) degS 3533725..3534882 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  ETL58_RS18495 (ETL58_18495) yvyE 3535099..3535752 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52655.85 Da        Isoelectric Point: 10.1764

>NTDB_id=340824 ETL58_RS18475 WP_101172232.1 3530513..3531904(-) (comFA) [Bacillus subtilis strain SRCM103629]
MNVPVEKNSSFSKELQQRLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRRYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWKEENESNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGAEISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIKFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=340824 ETL58_RS18475 WP_101172232.1 3530513..3531904(-) (comFA) [Bacillus subtilis strain SRCM103629]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGAGGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGAGATATAGATGTAATAGGTGCGGACAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGAAAGAGGAAAATGA
ATCAAACTGGAAGTCTATTAAGCTGACATGGGATGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGTGCTGAAATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCATTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAAAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGGGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.704

100

0.987

Multiple sequence alignment