Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ETL58_RS18465 Genome accession   NZ_CP035413
Coordinates   3529471..3530193 (-) Length   240 a.a.
NCBI ID   WP_033884179.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103629     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3524471..3535193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETL58_RS18430 (ETL58_18430) fliW 3524611..3525042 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  ETL58_RS18435 (ETL58_18435) yviE 3525063..3525638 (-) 576 WP_015384781.1 DUF6470 family protein -
  ETL58_RS18440 (ETL58_18440) flgL 3525685..3526581 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  ETL58_RS18445 (ETL58_18445) flgK 3526592..3528115 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  ETL58_RS18450 (ETL58_18450) flgN 3528134..3528616 (-) 483 WP_014478127.1 flagellar protein FlgN -
  ETL58_RS18455 (ETL58_18455) flgM 3528632..3528898 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  ETL58_RS18460 (ETL58_18460) yvyF 3528979..3529398 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  ETL58_RS18465 (ETL58_18465) comFC 3529471..3530193 (-) 723 WP_033884179.1 comF operon protein ComFC Machinery gene
  ETL58_RS18470 (ETL58_18470) comFB 3530157..3530453 (-) 297 WP_014478130.1 late competence protein ComFB -
  ETL58_RS18475 (ETL58_18475) comFA 3530513..3531904 (-) 1392 WP_101172232.1 ATP-dependent helicase ComFA Machinery gene
  ETL58_RS18480 (ETL58_18480) fakBA 3532010..3532855 (-) 846 WP_003244125.1 DegV family protein -
  ETL58_RS18485 (ETL58_18485) degU 3532953..3533642 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ETL58_RS18490 (ETL58_18490) degS 3533725..3534882 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27544.83 Da        Isoelectric Point: 9.3157

>NTDB_id=340823 ETL58_RS18465 WP_033884179.1 3529471..3530193(-) (comFC) [Bacillus subtilis strain SRCM103629]
MSHEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=340823 ETL58_RS18465 WP_033884179.1 3529471..3530193(-) (comFC) [Bacillus subtilis strain SRCM103629]
ATGTCACACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAGAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.75

100

0.988

Multiple sequence alignment