Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ETL58_RS16515 Genome accession   NZ_CP035413
Coordinates   3142417..3143061 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103629     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3137417..3148061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETL58_RS16480 (ETL58_16480) mrpB 3138607..3139038 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  ETL58_RS16485 (ETL58_16485) mrpC 3139038..3139379 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  ETL58_RS16490 (ETL58_16490) mrpD 3139372..3140853 (+) 1482 WP_129010236.1 Na+/H+ antiporter subunit D -
  ETL58_RS16495 (ETL58_16495) mrpE 3140859..3141335 (+) 477 WP_029318490.1 Na+/H+ antiporter subunit E -
  ETL58_RS16500 (ETL58_16500) mrpF 3141335..3141619 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  ETL58_RS16505 (ETL58_16505) mnhG 3141603..3141977 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  ETL58_RS16510 (ETL58_16510) yuxO 3142018..3142398 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  ETL58_RS16515 (ETL58_16515) comA 3142417..3143061 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  ETL58_RS16520 (ETL58_16520) comP 3143142..3145439 (-) 2298 WP_032730345.1 histidine kinase Regulator
  ETL58_RS16525 (ETL58_16525) comX 3145447..3145608 (-) 162 WP_003228803.1 competence pheromone ComX -
  ETL58_RS16530 (ETL58_16530) - 3145623..3146483 (-) 861 WP_029318489.1 polyprenyl synthetase family protein -
  ETL58_RS16535 (ETL58_16535) degQ 3146668..3146808 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  ETL58_RS16540 (ETL58_16540) - 3147030..3147155 (+) 126 WP_003228793.1 hypothetical protein -
  ETL58_RS16545 (ETL58_16545) - 3147269..3147637 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=340818 ETL58_RS16515 WP_003220716.1 3142417..3143061(-) (comA) [Bacillus subtilis strain SRCM103629]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=340818 ETL58_RS16515 WP_003220716.1 3142417..3143061(-) (comA) [Bacillus subtilis strain SRCM103629]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment