Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   F5K02_RS02265 Genome accession   NZ_CP044132
Coordinates   477649..478083 (+) Length   144 a.a.
NCBI ID   WP_094032328.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZKY01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 472649..483083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5K02_RS02235 (F5K02_02235) - 472903..473406 (+) 504 WP_094032083.1 D-lyxose/D-mannose family sugar isomerase -
  F5K02_RS02240 (F5K02_02240) - 473495..474118 (+) 624 WP_094032084.1 GNAT family protein -
  F5K02_RS02245 (F5K02_02245) - 474125..474547 (+) 423 WP_003156270.1 pyridoxamine 5'-phosphate oxidase family protein -
  F5K02_RS02250 (F5K02_02250) - 475045..475854 (+) 810 WP_012116831.1 lipid II flippase Amj family protein -
  F5K02_RS02260 (F5K02_02260) - 477182..477472 (-) 291 WP_003156265.1 DUF3817 domain-containing protein -
  F5K02_RS02265 (F5K02_02265) lrpC 477649..478083 (+) 435 WP_094032328.1 Lrp/AsnC family transcriptional regulator Machinery gene
  F5K02_RS02270 (F5K02_02270) - 478147..480333 (+) 2187 WP_094032335.1 DNA topoisomerase III -
  F5K02_RS02275 (F5K02_02275) - 480567..481652 (+) 1086 WP_241457899.1 lipoprotein YdaJ -
  F5K02_RS02280 (F5K02_02280) - 481633..482481 (+) 849 WP_144664516.1 diguanylate cyclase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16491.15 Da        Isoelectric Point: 9.0770

>NTDB_id=340747 F5K02_RS02265 WP_094032328.1 477649..478083(+) (lrpC) [Bacillus amyloliquefaciens strain ZKY01]
MKLDNVDLSIIKELQRDSRLSMRELGRKIKLSAPSVTERVRQLESFGVIKRYTLDIDQKKIGLPVSCIVEATVKNGKYDQ
FKTYIQSIPNIEFCFRVAGAACYMLKMNADSLETIEHFINRTSPYAQTVTHVIFSEIDTKNVLN

Nucleotide


Download         Length: 435 bp        

>NTDB_id=340747 F5K02_RS02265 WP_094032328.1 477649..478083(+) (lrpC) [Bacillus amyloliquefaciens strain ZKY01]
ATGAAACTAGATAATGTGGATCTGAGCATCATCAAAGAGCTCCAAAGGGACAGCCGCCTGTCCATGCGGGAACTGGGCAG
AAAAATCAAATTGTCAGCTCCGTCCGTCACAGAGCGTGTCAGACAGCTTGAATCCTTCGGCGTCATTAAGCGCTATACAT
TGGACATTGATCAAAAAAAGATCGGGCTTCCTGTTTCCTGCATTGTCGAAGCGACAGTGAAAAACGGAAAATACGATCAA
TTTAAAACCTACATTCAATCCATTCCCAACATTGAATTTTGTTTTCGGGTCGCCGGGGCGGCGTGTTATATGCTGAAGAT
GAACGCGGACAGTCTGGAAACGATCGAACACTTCATCAACCGCACCTCTCCGTATGCCCAAACCGTGACCCACGTCATTT
TCTCAGAAATTGACACAAAAAACGTCCTCAATTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(69-135)

AsnC-type helix-turn-helix domain (HTH_AsnC-type)

(3-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

80.851

97.917

0.792

Multiple sequence alignment