Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ETK71_RS18420 Genome accession   NZ_CP035411
Coordinates   3537073..3537762 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain SRCM103622     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3532073..3542762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETK71_RS18385 (ETK71_18385) flgN 3532253..3532735 (-) 483 WP_014481048.1 flagellar protein FlgN -
  ETK71_RS18390 (ETK71_18390) flgM 3532751..3533017 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  ETK71_RS18395 (ETK71_18395) yvyF 3533098..3533517 (-) 420 WP_129138208.1 TIGR03826 family flagellar region protein -
  ETK71_RS18400 (ETK71_18400) comFC 3533591..3534313 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  ETK71_RS18405 (ETK71_18405) comFB 3534277..3534573 (-) 297 WP_003227989.1 late competence protein ComFB -
  ETK71_RS18410 (ETK71_18410) comFA 3534633..3536024 (-) 1392 WP_041850475.1 ATP-dependent helicase ComFA Machinery gene
  ETK71_RS18415 (ETK71_18415) fakBA 3536130..3536975 (-) 846 WP_003227986.1 DegV family protein -
  ETK71_RS18420 (ETK71_18420) degU 3537073..3537762 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ETK71_RS18425 (ETK71_18425) degS 3537845..3539002 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  ETK71_RS18430 (ETK71_18430) yvyE 3539219..3539872 (+) 654 WP_003227979.1 YigZ family protein -
  ETK71_RS18435 (ETK71_18435) tagV 3539872..3541047 (+) 1176 WP_003227977.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  ETK71_RS18440 (ETK71_18440) tagO 3541120..3542196 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=340746 ETK71_RS18420 WP_003219701.1 3537073..3537762(-) (degU) [Bacillus subtilis strain SRCM103622]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=340746 ETK71_RS18420 WP_003219701.1 3537073..3537762(-) (degU) [Bacillus subtilis strain SRCM103622]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCAATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment