Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ETK61_RS19660 Genome accession   NZ_CP035406
Coordinates   3627806..3628495 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain SRCM103612     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3622806..3633495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETK61_RS19625 (ETK61_19630) flgN 3622986..3623468 (-) 483 WP_041351273.1 flagellar protein FlgN -
  ETK61_RS19630 (ETK61_19635) flgM 3623484..3623750 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  ETK61_RS19635 (ETK61_19640) yvyF 3623831..3624250 (-) 420 WP_041351272.1 TIGR03826 family flagellar region protein -
  ETK61_RS19640 (ETK61_19645) comFC 3624324..3625046 (-) 723 WP_129137967.1 comF operon protein ComFC Machinery gene
  ETK61_RS19645 (ETK61_19650) comFB 3625010..3625306 (-) 297 WP_003227989.1 late competence protein ComFB -
  ETK61_RS19650 (ETK61_19655) comFA 3625366..3626757 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  ETK61_RS19655 (ETK61_19660) fakBA 3626863..3627708 (-) 846 WP_003244125.1 DegV family protein -
  ETK61_RS19660 (ETK61_19665) degU 3627806..3628495 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ETK61_RS19665 (ETK61_19670) degS 3628578..3629735 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  ETK61_RS19670 (ETK61_19675) yvyE 3629952..3630605 (+) 654 WP_121591204.1 YigZ family protein -
  ETK61_RS19675 (ETK61_19680) tagV 3630605..3631780 (+) 1176 WP_129137968.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  ETK61_RS19680 (ETK61_19685) tagO 3631853..3632929 (-) 1077 WP_043858787.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=340591 ETK61_RS19660 WP_003219701.1 3627806..3628495(-) (degU) [Bacillus subtilis strain SRCM103612]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=340591 ETK61_RS19660 WP_003219701.1 3627806..3628495(-) (degU) [Bacillus subtilis strain SRCM103612]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment