Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ETK61_RS19640 Genome accession   NZ_CP035406
Coordinates   3624324..3625046 (-) Length   240 a.a.
NCBI ID   WP_129137967.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103612     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3619324..3630046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETK61_RS19605 (ETK61_19610) fliW 3619463..3619894 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  ETK61_RS19610 (ETK61_19615) yviE 3619915..3620490 (-) 576 WP_003243053.1 DUF6470 family protein -
  ETK61_RS19615 (ETK61_19620) flgL 3620537..3621433 (-) 897 WP_129137965.1 flagellar hook-associated protein FlgL -
  ETK61_RS19620 (ETK61_19625) flgK 3621444..3622967 (-) 1524 WP_129137966.1 flagellar hook-associated protein FlgK -
  ETK61_RS19625 (ETK61_19630) flgN 3622986..3623468 (-) 483 WP_041351273.1 flagellar protein FlgN -
  ETK61_RS19630 (ETK61_19635) flgM 3623484..3623750 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  ETK61_RS19635 (ETK61_19640) yvyF 3623831..3624250 (-) 420 WP_041351272.1 TIGR03826 family flagellar region protein -
  ETK61_RS19640 (ETK61_19645) comFC 3624324..3625046 (-) 723 WP_129137967.1 comF operon protein ComFC Machinery gene
  ETK61_RS19645 (ETK61_19650) comFB 3625010..3625306 (-) 297 WP_003227989.1 late competence protein ComFB -
  ETK61_RS19650 (ETK61_19655) comFA 3625366..3626757 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  ETK61_RS19655 (ETK61_19660) fakBA 3626863..3627708 (-) 846 WP_003244125.1 DegV family protein -
  ETK61_RS19660 (ETK61_19665) degU 3627806..3628495 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ETK61_RS19665 (ETK61_19670) degS 3628578..3629735 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.80 Da        Isoelectric Point: 9.0021

>NTDB_id=340589 ETK61_RS19640 WP_129137967.1 3624324..3625046(-) (comFC) [Bacillus subtilis strain SRCM103612]
MSNEAGGGIHKLICLLCDSQFSQDITWRTLFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAHLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSECIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=340589 ETK61_RS19640 WP_129137967.1 3624324..3625046(-) (comFC) [Bacillus subtilis strain SRCM103612]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATATTACATG
GAGAACCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACATCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGTGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992

Multiple sequence alignment