Detailed information    

insolico Bioinformatically predicted

Overview


Name   degQ   Type   Regulator
Locus tag   ETK61_RS17440 Genome accession   NZ_CP035406
Coordinates   3199294..3199434 (-) Length   46 a.a.
NCBI ID   WP_003220708.1    Uniprot ID   G4P060
Organism   Bacillus subtilis strain SRCM103612     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context


Location: 3194294..3204434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETK61_RS17415 (ETK61_17420) yuxO 3194608..3194988 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  ETK61_RS17420 (ETK61_17425) comA 3195007..3195651 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  ETK61_RS17425 (ETK61_17430) comP 3195732..3198041 (-) 2310 WP_129137873.1 two-component system sensor histidine kinase ComP Regulator
  ETK61_RS17430 (ETK61_17435) comX 3198056..3198223 (-) 168 WP_100505762.1 competence pheromone ComX Regulator
  ETK61_RS17435 (ETK61_17440) comQ 3198207..3199109 (-) 903 WP_129137874.1 polyprenyl synthetase family protein Regulator
  ETK61_RS17440 (ETK61_17445) degQ 3199294..3199434 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  ETK61_RS17445 (ETK61_17450) - 3199656..3199781 (+) 126 WP_003228793.1 hypothetical protein -
  ETK61_RS17450 (ETK61_17455) - 3199895..3200263 (+) 369 WP_014477834.1 hypothetical protein -
  ETK61_RS17455 (ETK61_17460) pdeH 3200239..3201468 (-) 1230 WP_014480707.1 cyclic di-GMP phosphodiesterase -
  ETK61_RS17460 (ETK61_17465) pncB 3201605..3203077 (-) 1473 WP_003228788.1 nicotinate phosphoribosyltransferase -
  ETK61_RS17465 (ETK61_17470) pncA 3203093..3203644 (-) 552 WP_014477836.1 isochorismatase family cysteine hydrolase -
  ETK61_RS17470 (ETK61_17475) yueI 3203741..3204139 (-) 399 WP_085185940.1 YueI family protein -

Sequence


Protein


Download         Length: 46 a.a.        Molecular weight: 5546.44 Da        Isoelectric Point: 6.2559

>NTDB_id=340586 ETK61_RS17440 WP_003220708.1 3199294..3199434(-) (degQ) [Bacillus subtilis strain SRCM103612]
MEKKLEEVKQLLFRLELDIKETTDSLRNINKSIDQLDKYNYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=340586 ETK61_RS17440 WP_003220708.1 3199294..3199434(-) (degQ) [Bacillus subtilis strain SRCM103612]
ATGGAAAAGAAACTTGAAGAAGTAAAACAATTGTTATTCCGACTCGAACTTGATATTAAAGAAACGACAGATTCATTACG
AAACATTAACAAAAGCATTGATCAACTCGATAAATACAATTATGCAATGAAAATTTCGTGA

Domains


Predicted by InterproScan.

(1-46)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB G4P060

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

100

100

1


Multiple sequence alignment