Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   FOB62_RS04545 Genome accession   NZ_CP044102
Coordinates   918757..919002 (-) Length   81 a.a.
NCBI ID   WP_003058569.1    Uniprot ID   A0ABU0A7C2
Organism   Streptococcus dysgalactiae strain FDAARGOS_654     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 913757..924002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB62_RS04510 (FOB62_04510) - 913963..914400 (-) 438 WP_012766452.1 hypothetical protein -
  FOB62_RS04515 (FOB62_04515) - 914418..915098 (-) 681 WP_012766451.1 type II CAAX endopeptidase family protein -
  FOB62_RS04520 (FOB62_04520) - 915201..915407 (-) 207 WP_003058508.1 helix-turn-helix transcriptional regulator -
  FOB62_RS04525 (FOB62_04525) - 915713..916909 (-) 1197 WP_003058485.1 acetate kinase -
  FOB62_RS04530 (FOB62_04530) comGH 916968..917921 (-) 954 WP_003060701.1 class I SAM-dependent methyltransferase Machinery gene
  FOB62_RS04535 (FOB62_04535) comGG 917984..918358 (-) 375 WP_014611933.1 competence type IV pilus minor pilin ComGG -
  FOB62_RS04540 (FOB62_04540) comGF 918336..918776 (-) 441 WP_003061780.1 competence type IV pilus minor pilin ComGF Machinery gene
  FOB62_RS04545 (FOB62_04545) comGE 918757..919002 (-) 246 WP_003058569.1 competence type IV pilus minor pilin ComGE Machinery gene
  FOB62_RS04550 (FOB62_04550) comGD 919010..919438 (-) 429 WP_014611932.1 competence type IV pilus minor pilin ComGD Machinery gene
  FOB62_RS04555 (FOB62_04555) comGC 919413..919739 (-) 327 WP_003055259.1 competence type IV pilus major pilin ComGC Machinery gene
  FOB62_RS04560 (FOB62_04560) comGB 919741..920772 (-) 1032 WP_015057201.1 competence type IV pilus assembly protein ComGB Machinery gene
  FOB62_RS04565 (FOB62_04565) comGA/cglA 920708..921649 (-) 942 WP_014611930.1 competence type IV pilus ATPase ComGA Machinery gene
  FOB62_RS04570 (FOB62_04570) - 921730..922095 (-) 366 WP_003055257.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 81 a.a.        Molecular weight: 9280.82 Da        Isoelectric Point: 9.6222

>NTDB_id=340571 FOB62_RS04545 WP_003058569.1 918757..919002(-) (comGE) [Streptococcus dysgalactiae strain FDAARGOS_654]
MATGLLVAIVILVLTSLEQSQTRLTYYRSQQEKLNLALMAVQTGQASLNMNDYRLTVLRTEKTLIVRDQEGEVIRIEKKD
R

Nucleotide


Download         Length: 246 bp        

>NTDB_id=340571 FOB62_RS04545 WP_003058569.1 918757..919002(-) (comGE) [Streptococcus dysgalactiae strain FDAARGOS_654]
ATGGCAACAGGACTCCTCGTAGCTATTGTCATACTGGTTCTAACAAGTTTGGAGCAAAGTCAGACAAGGTTGACATATTA
TCGCAGCCAACAAGAAAAGCTCAACCTAGCTCTGATGGCAGTACAAACTGGTCAAGCGTCTCTCAATATGAATGATTATC
GTCTGACGGTTTTACGCACAGAAAAAACACTTATCGTTAGGGATCAGGAAGGAGAAGTTATTAGAATTGAAAAAAAGGAC
AGGTAG

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(2-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

41.772

97.531

0.407
  comGE Streptococcus mutans UA159

41.772

97.531

0.407