Detailed information NTG0340405

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ETA57_RS09735
• Genome accession: NZ_CP035404
• Coordinates: 1872189..1872968 (+)
• Length: 259 a.a.
• NCBI ID: WP_003181756.1
• Uniprot ID: A0A1Y0YKK2
• Organism: Bacillus licheniformis strain SRCM103583
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1867189..1877968

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ETA57_RS09715 (ETA57_09715)	trmFO	1867886..1869190 (+)	1305	WP_003181748.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ETA57_RS09720 (ETA57_09720)	xerC	1869257..1870171 (+)	915	WP_011197974.1	tyrosine recombinase XerC	-
ETA57_RS09725 (ETA57_09725)	hslV	1870185..1870730 (+)	546	WP_003181752.1	ATP-dependent protease subunit HslV	-
ETA57_RS09730 (ETA57_09730)	hslU	1870738..1872150 (+)	1413	WP_254926368.1	HslU--HslV peptidase ATPase subunit	-
ETA57_RS09735 (ETA57_09735)	codY	1872189..1872968 (+)	780	WP_003181756.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ETA57_RS09740 (ETA57_09740)	flgB	1873322..1873711 (+)	390	WP_003181758.1	flagellar basal body rod protein FlgB	-
ETA57_RS09745 (ETA57_09745)	flgC	1873711..1874163 (+)	453	WP_009328519.1	flagellar basal body rod protein FlgC	-
ETA57_RS09750 (ETA57_09750)	fliE	1874177..1874494 (+)	318	WP_003181764.1	flagellar hook-basal body complex protein FliE	-
ETA57_RS09755 (ETA57_09755)	fliF	1874545..1876146 (+)	1602	WP_003181766.1	flagellar basal-body MS-ring/collar protein FliF	-
ETA57_RS09760 (ETA57_09760)	fliG	1876160..1877176 (+)	1017	WP_003181768.1	flagellar motor switch protein FliG	-
ETA57_RS09765 (ETA57_09765)	fliH	1877160..1877927 (+)	768	WP_009328518.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29073.42 Da
• Isoelectric Point: 4.8196

>NTDB_id=340405 ETA57_RS09735 WP_003181756.1 1872189..1872968(+) (codY) [Bacillus licheniformis strain SRCM103583]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=340405 ETA57_RS09735 WP_003181756.1 1872189..1872968(+) (codY) [Bacillus licheniformis strain SRCM103583]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGATTATACAAAAAGCCTGTTC
AACATTCCGGAAACGTCATCTAACCTTGACATCAACAGCGAATACACAGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACGGTCGTTCCGATCATCGGAGGAGGCGAAAGACTGGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCCACTGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCGGAA
GAGATCGAAGAGGAAGCGCGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCACTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAGGAGCTTGACGGAAATGAAGGCCTGCTTGTCGCTAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAACGCGCTCCGTAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCACTAGGGATGAAAGGCACA
TACATCAAAGTGCTGAACAACAAATTTTTGATGGAGTTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: A0A1Y0YKK2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	94.595	100	0.946
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467