Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ETA15_RS18760 Genome accession   NZ_CP035403
Coordinates   3512119..3512808 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain SRCM103581     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3507119..3517808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA15_RS18725 (ETA15_18725) flgN 3507321..3507803 (-) 483 WP_041351273.1 flagellar protein FlgN -
  ETA15_RS18730 (ETA15_18730) flgM 3507819..3508085 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  ETA15_RS18735 (ETA15_18735) yvyF 3508166..3508585 (-) 420 WP_017695307.1 TIGR03826 family flagellar region protein -
  ETA15_RS18740 (ETA15_18740) comFC 3508659..3509381 (-) 723 WP_026113628.1 comF operon protein ComFC Machinery gene
  ETA15_RS18745 (ETA15_18745) comFB 3509345..3509627 (-) 283 Protein_3616 late competence development ComFB family protein -
  ETA15_RS18750 (ETA15_18750) comFA 3509679..3511070 (-) 1392 WP_017695309.1 ATP-dependent helicase ComFA Machinery gene
  ETA15_RS18755 (ETA15_18755) fakBA 3511176..3512021 (-) 846 WP_017695310.1 DegV family protein -
  ETA15_RS18760 (ETA15_18760) degU 3512119..3512808 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ETA15_RS18765 (ETA15_18765) degS 3512891..3514048 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  ETA15_RS18770 (ETA15_18770) yvyE 3514265..3514918 (+) 654 WP_003227979.1 YigZ family protein -
  ETA15_RS18775 (ETA15_18775) tagV 3514918..3516093 (+) 1176 WP_129093463.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  ETA15_RS18780 (ETA15_18780) tagO 3516166..3517242 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=340364 ETA15_RS18760 WP_003219701.1 3512119..3512808(-) (degU) [Bacillus subtilis strain SRCM103581]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=340364 ETA15_RS18760 WP_003219701.1 3512119..3512808(-) (degU) [Bacillus subtilis strain SRCM103581]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment