Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ETA15_RS18740 Genome accession   NZ_CP035403
Coordinates   3508659..3509381 (-) Length   240 a.a.
NCBI ID   WP_026113628.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103581     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3503659..3514381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA15_RS18705 (ETA15_18705) fliW 3503798..3504229 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  ETA15_RS18710 (ETA15_18710) yviE 3504250..3504825 (-) 576 WP_015384781.1 DUF6470 family protein -
  ETA15_RS18715 (ETA15_18715) flgL 3504872..3505768 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  ETA15_RS18720 (ETA15_18720) flgK 3505779..3507302 (-) 1524 WP_041351274.1 flagellar hook-associated protein FlgK -
  ETA15_RS18725 (ETA15_18725) flgN 3507321..3507803 (-) 483 WP_041351273.1 flagellar protein FlgN -
  ETA15_RS18730 (ETA15_18730) flgM 3507819..3508085 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  ETA15_RS18735 (ETA15_18735) yvyF 3508166..3508585 (-) 420 WP_017695307.1 TIGR03826 family flagellar region protein -
  ETA15_RS18740 (ETA15_18740) comFC 3508659..3509381 (-) 723 WP_026113628.1 comF operon protein ComFC Machinery gene
  ETA15_RS18745 (ETA15_18745) comFB 3509345..3509627 (-) 283 Protein_3616 late competence development ComFB family protein -
  ETA15_RS18750 (ETA15_18750) comFA 3509679..3511070 (-) 1392 WP_017695309.1 ATP-dependent helicase ComFA Machinery gene
  ETA15_RS18755 (ETA15_18755) fakBA 3511176..3512021 (-) 846 WP_017695310.1 DegV family protein -
  ETA15_RS18760 (ETA15_18760) degU 3512119..3512808 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ETA15_RS18765 (ETA15_18765) degS 3512891..3514048 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27359.77 Da        Isoelectric Point: 9.7832

>NTDB_id=340362 ETA15_RS18740 WP_026113628.1 3508659..3509381(-) (comFC) [Bacillus subtilis strain SRCM103581]
MSNEAGGGIHKLICLLCDSQFSQDVTWIALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRG
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
GRPTHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAKGMNIILIDDLYTTGATLHFAARCLLEKGKAASVASFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=340362 ETA15_RS18740 WP_026113628.1 3508659..3509381(-) (comFC) [Bacillus subtilis strain SRCM103581]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GATAGCCCTTTTTTTATTAAAGCCGGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTGTGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGGGGC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GGCAGGCCTACCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAAAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGGCATCTTTTACATTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

96.667

100

0.967

Multiple sequence alignment