Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ETA15_RS18750 Genome accession   NZ_CP035403
Coordinates   3509679..3511070 (-) Length   463 a.a.
NCBI ID   WP_017695309.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103581     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3504679..3516070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA15_RS18715 (ETA15_18715) flgL 3504872..3505768 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  ETA15_RS18720 (ETA15_18720) flgK 3505779..3507302 (-) 1524 WP_041351274.1 flagellar hook-associated protein FlgK -
  ETA15_RS18725 (ETA15_18725) flgN 3507321..3507803 (-) 483 WP_041351273.1 flagellar protein FlgN -
  ETA15_RS18730 (ETA15_18730) flgM 3507819..3508085 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  ETA15_RS18735 (ETA15_18735) yvyF 3508166..3508585 (-) 420 WP_017695307.1 TIGR03826 family flagellar region protein -
  ETA15_RS18740 (ETA15_18740) comFC 3508659..3509381 (-) 723 WP_026113628.1 comF operon protein ComFC Machinery gene
  ETA15_RS18745 (ETA15_18745) comFB 3509345..3509627 (-) 283 Protein_3616 late competence development ComFB family protein -
  ETA15_RS18750 (ETA15_18750) comFA 3509679..3511070 (-) 1392 WP_017695309.1 ATP-dependent helicase ComFA Machinery gene
  ETA15_RS18755 (ETA15_18755) fakBA 3511176..3512021 (-) 846 WP_017695310.1 DegV family protein -
  ETA15_RS18760 (ETA15_18760) degU 3512119..3512808 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ETA15_RS18765 (ETA15_18765) degS 3512891..3514048 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  ETA15_RS18770 (ETA15_18770) yvyE 3514265..3514918 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52474.49 Da        Isoelectric Point: 9.7310

>NTDB_id=340363 ETA15_RS18750 WP_017695309.1 3509679..3511070(-) (comFA) [Bacillus subtilis strain SRCM103581]
MNVPVEKNISFSKELRQTLRSRHLLRTELPFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCIMMGRVSEEVPLYSWEEENEPNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEEVLIWAVCGAGKTEILFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAFDVMIVDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGSPVFLFVPSVSILEKAAACFKGVDCRAESVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=340363 ETA15_RS18750 WP_017695309.1 3509679..3511070(-) (comFA) [Bacillus subtilis strain SRCM103581]
GTGAATGTGCCAGTTGAAAAAAACATTTCCTTTTCAAAAGAATTGCGGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCCCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCTATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTATCATGATGGGCAGAGTGAGTGAGGAGGTTCCTCTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGAAGTCGATTAAACTGACATGGGATGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGGTCCTCATCTGGGCAGTTTGCGGCGCTGGAAAAACAGAAATACTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATAGCAACACCTCGCACAGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAAGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCATTCGATGTAATGATCGTTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATTCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGGAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGTCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAAAGGTGTTGATTGCCGAGCCGAATCTGTGCACGCAGAAGACAAGCATAGGAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCGCCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCATTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

96.328

100

0.963

Multiple sequence alignment