Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   FOB71_RS04780 Genome accession   NZ_CP044068
Coordinates   1125500..1126435 (-) Length   311 a.a.
NCBI ID   WP_026050717.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FDAARGOS_663     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1120500..1131435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB71_RS04745 (FOB71_04740) - 1120578..1120874 (+) 297 WP_017422583.1 hypothetical protein -
  FOB71_RS04750 (FOB71_04745) - 1120954..1122213 (+) 1260 WP_017422582.1 hydroxymethylglutaryl-CoA reductase -
  FOB71_RS04755 (FOB71_04750) - 1122309..1122575 (-) 267 WP_017422581.1 hypothetical protein -
  FOB71_RS04760 (FOB71_04755) - 1122923..1123171 (+) 249 WP_017422580.1 YgjV family protein -
  FOB71_RS04765 (FOB71_04760) cueR 1123357..1123743 (+) 387 WP_017422578.1 Cu(I)-responsive transcriptional regulator -
  FOB71_RS04770 (FOB71_04765) vctC 1123794..1124549 (-) 756 WP_017422577.1 iron chelate ABC transporter ATP-binding protein VctC -
  FOB71_RS04775 (FOB71_04770) - 1124557..1125507 (-) 951 WP_017422576.1 iron chelate uptake ABC transporter family permease subunit -
  FOB71_RS04780 (FOB71_04775) ceuB 1125500..1126435 (-) 936 WP_026050717.1 iron chelate uptake ABC transporter permease subunit VctD Machinery gene
  FOB71_RS23170 - 1126667..1126924 (+) 258 WP_162268210.1 hypothetical protein -
  FOB71_RS04785 (FOB71_04780) - 1126936..1127211 (-) 276 WP_011081094.1 hypothetical protein -
  FOB71_RS04790 (FOB71_04785) - 1127394..1127765 (+) 372 WP_017422573.1 MazG nucleotide pyrophosphohydrolase domain-containing protein -
  FOB71_RS04795 (FOB71_04790) - 1127781..1128236 (+) 456 WP_017422572.1 NUDIX pyrophosphatase -
  FOB71_RS04800 (FOB71_04795) - 1128297..1128890 (-) 594 WP_371286991.1 sugar O-acetyltransferase -
  FOB71_RS04805 (FOB71_04800) - 1129050..1129724 (-) 675 WP_026050719.1 response regulator -
  FOB71_RS04810 (FOB71_04805) - 1129727..1131286 (-) 1560 WP_017422570.1 sensor histidine kinase -

Sequence


Protein


Download         Length: 311 a.a.        Molecular weight: 33633.24 Da        Isoelectric Point: 9.1346

>NTDB_id=340203 FOB71_RS04780 WP_026050717.1 1125500..1126435(-) (ceuB) [Vibrio vulnificus strain FDAARGOS_663]
MKKLLLALFLLSFASVFVGVGDLTPAMLLSGDTQALHLLVTSRLPRLLAILLSGAGLSIAGLIMQQISQNRFAAPSTSGT
IECAMLGYIVSLVFFGKGDSWLLIFSFAMGGTWLFVTFVQRIQFKNAVFIPLIGIIFGNIIDSLATFIAYRYDLLQNLSA
WSVANFANLLQGDYELLYIALPVGIFSYLYATRISAAGLGKDFALNLGLNYQQVVVIGVLLVSVLSASVVMIVGQLPFLG
LIVPNLVSYFYGDNLRRNIPLTALYGGLLVLGCDLLGRLIIFPYEVPISMVIAILGGAVFIYLILRGKQGV

Nucleotide


Download         Length: 936 bp        

>NTDB_id=340203 FOB71_RS04780 WP_026050717.1 1125500..1126435(-) (ceuB) [Vibrio vulnificus strain FDAARGOS_663]
GTGAAAAAGTTATTGCTGGCTCTGTTTTTGCTGTCCTTCGCGTCGGTGTTTGTCGGCGTAGGGGATCTTACACCAGCGAT
GTTGTTGTCTGGGGACACGCAGGCGCTTCATTTGCTCGTGACGAGCCGTTTACCTCGCCTGCTGGCGATACTGCTTTCTG
GTGCGGGTTTAAGTATCGCGGGCTTGATTATGCAGCAAATCAGCCAAAACCGATTTGCTGCACCATCGACGTCCGGCACG
ATTGAATGTGCCATGTTGGGCTACATCGTCAGCTTAGTGTTTTTTGGCAAAGGGGACAGTTGGTTACTGATCTTCAGTTT
TGCAATGGGTGGAACATGGTTGTTTGTCACGTTTGTCCAACGAATACAGTTCAAAAATGCCGTGTTTATTCCTCTAATCG
GCATCATTTTTGGCAACATCATTGATTCACTGGCAACGTTTATTGCCTATCGGTATGACTTGCTGCAAAACCTCTCTGCT
TGGTCTGTCGCCAATTTCGCCAACCTTTTGCAAGGTGATTACGAACTGCTCTACATTGCGCTTCCGGTGGGAATATTCAG
CTATCTCTATGCGACAAGAATTTCCGCTGCAGGCTTAGGTAAGGACTTCGCTCTCAACCTTGGTTTGAACTATCAGCAGG
TGGTGGTGATTGGTGTTCTGTTGGTCTCGGTACTTTCCGCCAGTGTCGTCATGATCGTCGGGCAATTGCCTTTCTTGGGG
CTGATTGTGCCAAATCTGGTGAGCTATTTTTATGGCGATAATTTACGCCGCAATATCCCTCTGACTGCCCTATATGGCGG
CTTGCTGGTGCTTGGTTGTGACTTGCTTGGCCGCTTGATTATTTTCCCTTATGAAGTGCCCATTTCCATGGTGATTGCCA
TTTTGGGTGGCGCTGTGTTTATCTATCTGATCTTGAGAGGGAAGCAAGGTGTCTGA

Domains


Predicted by InterProScan.

(8-306)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

43.226

99.678

0.431


Multiple sequence alignment