Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   FOB71_RS03030 Genome accession   NZ_CP044068
Coordinates   689717..690325 (-) Length   202 a.a.
NCBI ID   WP_026050808.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FDAARGOS_663     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 684717..695325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB71_RS03015 (FOB71_03010) manA 685559..686767 (-) 1209 WP_017422661.1 mannose-6-phosphate isomerase, class I -
  FOB71_RS03020 (FOB71_03015) - 686872..688212 (-) 1341 WP_017422662.1 MFS transporter -
  FOB71_RS03025 (FOB71_03020) uhpB 688218..689717 (-) 1500 WP_017422663.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  FOB71_RS03030 (FOB71_03025) letA 689717..690325 (-) 609 WP_026050808.1 transcriptional regulator UhpA Regulator
  FOB71_RS03035 (FOB71_03030) uhpT 690462..691859 (-) 1398 WP_011152339.1 hexose-6-phosphate:phosphate antiporter -
  FOB71_RS03040 (FOB71_03035) - 692092..692352 (-) 261 WP_017422665.1 DUF3012 domain-containing protein -
  FOB71_RS03045 (FOB71_03040) - 692509..693126 (-) 618 WP_017422666.1 glutathione S-transferase family protein -
  FOB71_RS03050 (FOB71_03045) - 693136..694167 (-) 1032 WP_017422667.1 NADP-dependent oxidoreductase -
  FOB71_RS03055 (FOB71_03050) - 694255..694839 (-) 585 WP_017422668.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21492.97 Da        Isoelectric Point: 5.9987

>NTDB_id=340199 FOB71_RS03030 WP_026050808.1 689717..690325(-) (letA) [Vibrio vulnificus strain FDAARGOS_663]
MINVALVDDHVIVRSGFAQLLNLEADICVVGEFGSVAEARIGLPACKPDVVILDISMADESGLTLLSEIPSGIACIMLSV
HDSPAMVEKSLKLGAKGYLSKRCSPDELVQAVRTSAAGGCYLTPDIAMKLATPNDKATSLTQLTRRENEVCQLLARGLDV
KAIAAELGLSHKTVHVHRANAIDKLGVKNNVELAKLFSQESF

Nucleotide


Download         Length: 609 bp        

>NTDB_id=340199 FOB71_RS03030 WP_026050808.1 689717..690325(-) (letA) [Vibrio vulnificus strain FDAARGOS_663]
ATGATTAACGTAGCGCTAGTGGATGACCATGTCATTGTTCGTTCTGGTTTTGCCCAACTATTAAATCTTGAGGCGGACAT
TTGCGTTGTCGGGGAATTTGGTTCCGTCGCGGAAGCGCGAATCGGCTTACCTGCGTGCAAGCCAGATGTGGTGATTCTTG
ATATCTCAATGGCAGATGAAAGCGGCCTAACGTTACTCAGTGAAATTCCATCCGGCATTGCCTGCATCATGTTGAGCGTG
CACGACTCCCCTGCCATGGTGGAAAAATCGCTCAAACTGGGTGCGAAAGGTTATTTAAGCAAACGTTGCAGCCCTGATGA
ACTGGTTCAAGCGGTGAGAACAAGCGCGGCAGGCGGTTGCTACCTTACTCCAGACATCGCAATGAAGCTTGCCACACCGA
ACGACAAAGCCACCAGTCTCACCCAACTCACGCGCCGAGAAAACGAAGTGTGTCAGTTGCTGGCAAGAGGGTTGGATGTG
AAGGCAATCGCTGCCGAACTGGGGCTAAGCCACAAAACGGTTCATGTTCATCGTGCTAACGCCATCGACAAGCTGGGCGT
AAAAAACAACGTCGAGCTGGCAAAACTGTTCTCTCAAGAGTCGTTTTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(142-196)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

36.275

100

0.366
  letA Legionella pneumophila strain ERS1305867

36.275

100

0.366
  degU Bacillus subtilis subsp. subtilis str. 168

34.906

100

0.366

Multiple sequence alignment