Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   FOB75_RS11730 Genome accession   NZ_CP044062
Coordinates   2324174..2326255 (+) Length   693 a.a.
NCBI ID   WP_150334454.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FDAARGOS_667     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2319174..2331255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB75_RS25085 - 2319809..2319982 (-) 174 WP_020839946.1 hypothetical protein -
  FOB75_RS11710 (FOB75_11710) gmk 2320077..2320700 (+) 624 WP_005496750.1 guanylate kinase -
  FOB75_RS11715 (FOB75_11715) rpoZ 2320882..2321154 (+) 273 WP_005379346.1 DNA-directed RNA polymerase subunit omega -
  FOB75_RS11720 (FOB75_11720) spoT 2321194..2323314 (+) 2121 WP_005459012.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  FOB75_RS11725 (FOB75_11725) trmH 2323372..2324055 (+) 684 WP_005478720.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH -
  FOB75_RS11730 (FOB75_11730) recG 2324174..2326255 (+) 2082 WP_150334454.1 ATP-dependent DNA helicase RecG Machinery gene
  FOB75_RS11740 (FOB75_11740) - 2326488..2327879 (+) 1392 WP_069495998.1 uracil-xanthine permease family protein -
  FOB75_RS11745 (FOB75_11745) envZ 2327945..2329237 (-) 1293 WP_068864916.1 two-component system sensor histidine kinase EnvZ -
  FOB75_RS11750 (FOB75_11750) ompR 2329343..2330062 (-) 720 WP_005459027.1 two-component system response regulator OmpR -
  FOB75_RS11755 (FOB75_11755) - 2330281..2330673 (-) 393 WP_017449064.1 DUF1090 domain-containing protein -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 76782.85 Da        Isoelectric Point: 7.9784

>NTDB_id=340150 FOB75_RS11730 WP_150334454.1 2324174..2326255(+) (recG) [Vibrio parahaemolyticus strain FDAARGOS_667]
MSAQMLSAVPLTSLSGVGAKVAEKLAKVGLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAAVQGKVMTVDTIFGKRKM
LTVKISDGNGTITLRFFNFTAAMKNNFSQGKLVHAYGEIKRGGMGLEIVHPDYKFYASEQKPDVEQSLTPVYPTTDGLRQ
ITLRNLTEQALALLDKAAVQELLPSGLYNHQITMSQALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSMLAVR
SKGQQDIALPLAPCDKLKKQLLAQLPFSPTNAQARVVKEIEFDLEKPHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQV
ALMAPTELLAEQHAINFANWFEAMGIQVGWLAGKLKGKAKETELARIASGEAQMIVGTHALFQEHVEFHHLALVIIDEQH
RFGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRNACL
NEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQEFKDNKLHLLVATTVIEVGVDVP
NSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHSPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQ
TGLADFKIADLVRDQRLIPEVQRIARHIHDNYPTNAAAIIDRWLGERDIYSKA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=340150 FOB75_RS11730 WP_150334454.1 2324174..2326255(+) (recG) [Vibrio parahaemolyticus strain FDAARGOS_667]
ATGTCTGCCCAAATGCTATCTGCTGTTCCTTTAACTTCTCTATCAGGAGTTGGCGCCAAAGTCGCAGAAAAACTCGCTAA
AGTCGGCTTGCATAGCGTTCAAGATTTGTTGTTCCACCTGCCCCTACGCTACGAAGATCGCACCCGCATTTATCCTATTG
CCAAACTGCACGCAGGCCTTTGGGCGGCCGTACAAGGCAAAGTCATGACCGTCGATACCATTTTTGGTAAACGCAAAATG
CTGACAGTCAAAATCAGTGATGGCAATGGCACCATCACGCTGCGTTTTTTCAACTTTACTGCAGCGATGAAGAACAATTT
TTCACAGGGTAAGTTAGTACACGCTTACGGAGAAATTAAGCGTGGTGGTATGGGGCTGGAAATTGTGCACCCTGACTACA
AATTTTACGCCAGTGAACAAAAGCCAGATGTGGAACAAAGCTTAACCCCGGTTTATCCAACCACAGATGGCCTGCGTCAA
ATCACCTTACGTAATCTTACTGAGCAAGCATTGGCGCTACTCGATAAAGCGGCAGTGCAAGAATTGCTACCTTCTGGCTT
GTATAACCATCAGATTACTATGTCGCAGGCGTTGCACACCATTCATCGCCCGCCGCCAACCATTAATTTAGATGAATTTG
ATGAAGGTAAGCACCCCGCTCAAATCCGTTTGATCATGGAAGAGTTGCTCGCTCAGAACTTGTCGATGTTGGCGGTTCGC
AGCAAAGGCCAGCAAGATATCGCCTTACCGCTCGCACCATGTGACAAACTGAAAAAACAGCTGTTGGCGCAACTGCCGTT
TTCTCCGACCAATGCTCAAGCACGCGTGGTGAAAGAGATTGAATTCGACCTCGAAAAGCCGCATCCAATGATGCGTCTTG
TCCAAGGTGACGTAGGCTCAGGGAAAACCCTCGTCGCGGCACTGGCTGCGGTTCGAGCTATCGAGCACGGTTATCAGGTC
GCACTAATGGCACCAACTGAGCTGCTCGCCGAACAACACGCCATCAATTTCGCCAACTGGTTTGAAGCCATGGGCATTCA
AGTAGGCTGGCTTGCTGGTAAGCTCAAGGGCAAAGCCAAAGAGACGGAACTGGCTCGCATTGCCAGCGGTGAAGCGCAAA
TGATAGTGGGTACTCACGCCCTCTTCCAAGAACATGTGGAATTTCATCACCTAGCTTTAGTCATCATTGATGAGCAGCAC
CGCTTTGGCGTCCATCAGCGATTAGAGTTACGTGAGAAAGGGGCAAAACAAGGCGCGTATCCGCATCAGCTCATCATGAC
GGCGACTCCGATTCCTCGCACGCTAGCAATGACAGCGTATGCTGATTTGGAAACGTCGGTGATAGACGAATTACCACCAG
GCCGAACGCCGATTCAAACCGTCGCCATTCCAGATACCAAACGTGACGACATTGTCGAGCGGGTACGAAACGCTTGTCTT
AACGAAGGCAAGCAAGCGTATTGGGTGTGTACGCTGATCGATGAATCAGAAGTGTTAGAAGCGCAAGCCGCAGCAGACAC
CGCTGAAGAGCTGCAGCGCAAACTGCCAGATGTAAAAATTGGCTTGGTTCATGGCCGTATGAAGCCCGCCGAAAAGCAAG
CTGTCATGCAAGAGTTTAAAGACAACAAGCTCCACCTGCTCGTAGCCACGACGGTGATAGAAGTTGGCGTAGACGTGCCA
AACTCTAGCTTGATGATCATCGAAAACCCTGAACGCCTTGGTTTGGCGCAATTACACCAGTTAAGAGGCCGCGTCGGTCG
AGGCTCGGTTGCCAGTCACTGTGTCCTGCTGTACCACTCCCCCCTGTCGAAAACCGCGCAAAAACGCCTCGGTGTGCTGC
GTGAAAGTAACGATGGCTTTGTTATTGCGCAGAAAGACCTAGAGATCCGCGGGCCCGGTGAATTGTTGGGCACCAAACAA
ACAGGCTTGGCTGATTTCAAAATTGCCGATTTAGTTCGAGATCAACGCTTAATCCCAGAAGTTCAGCGTATTGCACGTCA
TATTCACGACAATTACCCAACCAATGCAGCCGCCATTATCGATCGCTGGCTAGGCGAGCGTGATATCTACTCCAAAGCGT
AA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(272-433)

RecG wedge domain (RecG_wedge)

(15-172)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-675)

Helicase conserved C-terminal domain (Helicase_C)

(480-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.256

96.97

0.478
  recG/mmsA Streptococcus pneumoniae R6

40.299

96.681

0.39
  recG/mmsA Streptococcus pneumoniae R36A

40.299

96.681

0.39
  recG Bacillus subtilis subsp. subtilis str. 168

39.666

94.949

0.377

Multiple sequence alignment