Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ETA18_RS18540 Genome accession   NZ_CP035400
Coordinates   3547756..3548445 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain SRCM103835     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3542756..3553445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA18_RS18505 (ETA18_18505) flgN 3542936..3543418 (-) 483 WP_128993464.1 flagellar protein FlgN -
  ETA18_RS18510 (ETA18_18510) flgM 3543434..3543700 (-) 267 WP_024572695.1 flagellar biosynthesis anti-sigma factor FlgM -
  ETA18_RS18515 (ETA18_18515) yvyF 3543781..3544200 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  ETA18_RS18520 (ETA18_18520) comFC 3544274..3544996 (-) 723 WP_128993465.1 comF operon protein ComFC Machinery gene
  ETA18_RS18525 (ETA18_18525) comFB 3544960..3545256 (-) 297 WP_015483764.1 late competence protein ComFB -
  ETA18_RS18530 (ETA18_18530) comFA 3545316..3546707 (-) 1392 WP_128993466.1 ATP-dependent helicase ComFA Machinery gene
  ETA18_RS18535 (ETA18_18535) fakBA 3546813..3547658 (-) 846 WP_128993467.1 DegV family protein -
  ETA18_RS18540 (ETA18_18540) degU 3547756..3548445 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ETA18_RS18545 (ETA18_18545) degS 3548528..3549685 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  ETA18_RS18550 (ETA18_18550) - 3549902..3550555 (+) 654 WP_014481055.1 YigZ family protein -
  ETA18_RS18555 (ETA18_18555) - 3550555..3551547 (+) 993 WP_014481056.1 LCP family protein -
  ETA18_RS18560 (ETA18_18560) - 3552146..3552610 (+) 465 WP_228394534.1 hypothetical protein -
  ETA18_RS18565 (ETA18_18565) - 3552666..3553121 (+) 456 WP_095010556.1 hypothetical protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=340127 ETA18_RS18540 WP_003219701.1 3547756..3548445(-) (degU) [Bacillus subtilis strain SRCM103835]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=340127 ETA18_RS18540 WP_003219701.1 3547756..3548445(-) (degU) [Bacillus subtilis strain SRCM103835]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment