Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ETA18_RS18520 Genome accession   NZ_CP035400
Coordinates   3544274..3544996 (-) Length   240 a.a.
NCBI ID   WP_128993465.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103835     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3539274..3549996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA18_RS18485 (ETA18_18485) fliW 3539413..3539844 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  ETA18_RS18490 (ETA18_18490) yviE 3539865..3540440 (-) 576 WP_014481045.1 DUF6470 family protein -
  ETA18_RS18495 (ETA18_18495) flgL 3540487..3541383 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  ETA18_RS18500 (ETA18_18500) flgK 3541394..3542917 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  ETA18_RS18505 (ETA18_18505) flgN 3542936..3543418 (-) 483 WP_128993464.1 flagellar protein FlgN -
  ETA18_RS18510 (ETA18_18510) flgM 3543434..3543700 (-) 267 WP_024572695.1 flagellar biosynthesis anti-sigma factor FlgM -
  ETA18_RS18515 (ETA18_18515) yvyF 3543781..3544200 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  ETA18_RS18520 (ETA18_18520) comFC 3544274..3544996 (-) 723 WP_128993465.1 comF operon protein ComFC Machinery gene
  ETA18_RS18525 (ETA18_18525) comFB 3544960..3545256 (-) 297 WP_015483764.1 late competence protein ComFB -
  ETA18_RS18530 (ETA18_18530) comFA 3545316..3546707 (-) 1392 WP_128993466.1 ATP-dependent helicase ComFA Machinery gene
  ETA18_RS18535 (ETA18_18535) fakBA 3546813..3547658 (-) 846 WP_128993467.1 DegV family protein -
  ETA18_RS18540 (ETA18_18540) degU 3547756..3548445 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ETA18_RS18545 (ETA18_18545) degS 3548528..3549685 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27405.67 Da        Isoelectric Point: 9.4913

>NTDB_id=340125 ETA18_RS18520 WP_128993465.1 3544274..3544996(-) (comFC) [Bacillus subtilis strain SRCM103835]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKEALSRFKFRGDAEIINAFKSDFSSTFSKAYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAAGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=340125 ETA18_RS18520 WP_128993465.1 3544274..3544996(-) (comFC) [Bacillus subtilis strain SRCM103835]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAGCGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGCTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGTTTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GATCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAGCAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGCAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment