Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | ETA18_RS12440 | Genome accession | NZ_CP035400 |
| Coordinates | 2416991..2417326 (+) | Length | 111 a.a. |
| NCBI ID | WP_003226345.1 | Uniprot ID | A0AAE2VGU9 |
| Organism | Bacillus subtilis strain SRCM103835 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2411991..2422326
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ETA18_RS12420 (ETA18_12420) | gcvT | 2412584..2413672 (-) | 1089 | WP_128993147.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| ETA18_RS12425 (ETA18_12425) | hepAA | 2414113..2415786 (+) | 1674 | WP_128993149.1 | SNF2-related protein | - |
| ETA18_RS12430 (ETA18_12430) | yqhG | 2415807..2416601 (+) | 795 | WP_003230200.1 | YqhG family protein | - |
| ETA18_RS12435 (ETA18_12435) | sinI | 2416784..2416957 (+) | 174 | WP_003230187.1 | anti-repressor SinI | Regulator |
| ETA18_RS12440 (ETA18_12440) | sinR | 2416991..2417326 (+) | 336 | WP_003226345.1 | transcriptional regulator SinR | Regulator |
| ETA18_RS12445 (ETA18_12445) | tasA | 2417419..2418204 (-) | 786 | WP_014664586.1 | biofilm matrix protein TasA | - |
| ETA18_RS12450 (ETA18_12450) | sipW | 2418268..2418840 (-) | 573 | WP_128993656.1 | signal peptidase I SipW | - |
| ETA18_RS12455 (ETA18_12455) | tapA | 2418824..2419585 (-) | 762 | WP_128993152.1 | amyloid fiber anchoring/assembly protein TapA | - |
| ETA18_RS12460 (ETA18_12460) | yqzG | 2419857..2420183 (+) | 327 | WP_003246051.1 | YqzG/YhdC family protein | - |
| ETA18_RS12465 (ETA18_12465) | spoIITA | 2420225..2420404 (-) | 180 | WP_014480252.1 | YqzE family protein | - |
| ETA18_RS12470 (ETA18_12470) | comGG | 2420476..2420850 (-) | 375 | WP_128993153.1 | ComG operon protein ComGG | Machinery gene |
| ETA18_RS12475 (ETA18_12475) | comGF | 2420851..2421234 (-) | 384 | WP_029317913.1 | ComG operon protein ComGF | Machinery gene |
| ETA18_RS12480 (ETA18_12480) | comGE | 2421260..2421607 (-) | 348 | WP_014480255.1 | ComG operon protein 5 | Machinery gene |
| ETA18_RS12485 (ETA18_12485) | comGD | 2421591..2422022 (-) | 432 | WP_015714255.1 | comG operon protein ComGD | Machinery gene |
| ETA18_RS12490 (ETA18_12490) | comGC | 2422012..2422308 (-) | 297 | WP_014477332.1 | comG operon protein ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12988.64 Da Isoelectric Point: 7.2023
>NTDB_id=340097 ETA18_RS12440 WP_003226345.1 2416991..2417326(+) (sinR) [Bacillus subtilis strain SRCM103835]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=340097 ETA18_RS12440 WP_003226345.1 2416991..2417326(+) (sinR) [Bacillus subtilis strain SRCM103835]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |