Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ETA12_RS12860 Genome accession   NZ_CP035399
Coordinates   2597569..2598336 (-) Length   255 a.a.
NCBI ID   WP_007408287.1    Uniprot ID   A0AAP3YCF1
Organism   Bacillus velezensis strain SRCM103788     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2592569..2603336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA12_RS12840 (ETA12_12840) - 2592771..2593583 (-) 813 WP_071181854.1 pyruvate, water dikinase regulatory protein -
  ETA12_RS12845 (ETA12_12845) ccpN 2593609..2594247 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  ETA12_RS12850 (ETA12_12850) glyS 2594348..2596387 (-) 2040 WP_129093749.1 glycine--tRNA ligase subunit beta -
  ETA12_RS12855 (ETA12_12855) glyQ 2596380..2597267 (-) 888 WP_016938921.1 glycine--tRNA ligase subunit alpha -
  ETA12_RS12860 (ETA12_12860) recO 2597569..2598336 (-) 768 WP_007408287.1 DNA repair protein RecO Machinery gene
  ETA12_RS12865 (ETA12_12865) - 2598373..2598516 (-) 144 WP_007408286.1 YqzL family protein -
  ETA12_RS12870 (ETA12_12870) era 2598672..2599577 (-) 906 WP_007408285.1 GTPase Era -
  ETA12_RS12875 (ETA12_12875) - 2599558..2599968 (-) 411 WP_003152976.1 cytidine deaminase -
  ETA12_RS12880 (ETA12_12880) - 2600092..2600466 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  ETA12_RS12885 (ETA12_12885) ybeY 2600447..2600920 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  ETA12_RS12890 (ETA12_12890) - 2600921..2603053 (-) 2133 WP_014418406.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=340028 ETA12_RS12860 WP_007408287.1 2597569..2598336(-) (recO) [Bacillus velezensis strain SRCM103788]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=340028 ETA12_RS12860 WP_007408287.1 2597569..2598336(-) (recO) [Bacillus velezensis strain SRCM103788]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CGAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89

Multiple sequence alignment