Detailed information NTG0339953

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: F3K22_RS13955
• Genome accession: NZ_CP043958
• Coordinates: 3298307..3299593 (-)
• Length: 428 a.a.
• NCBI ID: WP_013003579.1
• Uniprot ID: C9Z7F2
• Organism: Streptomyces sp. LBUM 1475
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 3293307..3304593

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F3K22_RS13940 (F3K22_14085)	-	3293912..3296542 (-)	2631	WP_210524597.1	valine--tRNA ligase	-
F3K22_RS13945 (F3K22_14090)	-	3296680..3297636 (+)	957	WP_210534234.1	hypothetical protein	-
F3K22_RS13950 (F3K22_14095)	-	3297786..3298070 (-)	285	WP_210524598.1	hypothetical protein	-
F3K22_RS13955 (F3K22_14100)	clpX	3298307..3299593 (-)	1287	WP_013003579.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
F3K22_RS13960 (F3K22_14105)	clpP	3299797..3300477 (-)	681	WP_013003578.1	ATP-dependent Clp protease proteolytic subunit	Regulator
F3K22_RS13965 (F3K22_14110)	clpP	3300560..3301171 (-)	612	WP_037729632.1	ATP-dependent Clp protease proteolytic subunit	Regulator
F3K22_RS13970 (F3K22_14115)	tig	3301575..3302975 (-)	1401	WP_013003576.1	trigger factor	-
F3K22_RS13985 (F3K22_14130)	-	3303623..3303817 (-)	195	WP_033526477.1	hypothetical protein	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46873.74 Da
• Isoelectric Point: 4.8317

>NTDB_id=339953 F3K22_RS13955 WP_013003579.1 3298307..3299593(-) (clpX) [Streptomyces sp. LBUM 1475]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEA
AKKALSVAVYNHYKRVQAGENGGGQSREDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFSGLEKIIESRAGAKGIGFGATIRSKRELESKDQFEAVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLMSVMYEVPSRKDVARVVIT
ADVVRSNVNPTLIPRDARGRGPGEQKTA

Nucleotide

• Length: 1287 bp

>NTDB_id=339953 F3K22_RS13955 WP_013003579.1 3298307..3299593(-) (clpX) [Streptomyces sp. LBUM 1475]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGCGGCAAGAGCCAGAAGCAGGTCAAGAAGCTCAT
CGCAGGGCCCGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAGGAAGAACTCGCGGAGACCA
GTGAGGTCCGCTGGGAGGAACTCCCGAAGCCCCGCGAGATCTACGAGTTCCTCGAGGGCTACGTGGTGGGCCAGGAGGCG
GCCAAGAAGGCGCTCTCCGTGGCCGTGTACAACCACTACAAGCGCGTCCAGGCCGGTGAGAACGGCGGCGGCCAAAGCCG
CGAGGACGCCATCGAGTTGGCGAAGTCCAACATCCTGCTGCTGGGCCCCACGGGCTCGGGCAAGACCCTCCTCGCACAGA
CCCTCGCGCGCATGCTGAACGTCCCGTTCGCGATCGCGGACGCGACGGCGCTGACGGAGGCGGGGTATGTCGGCGAGGAC
GTCGAGAACATCCTGCTGAAGCTCATCCAGGCGGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCGCGGAAGAGTGAAAACCCCTCCATCACACGTGACGTGTCGGGCGAGGGCGTCCAGCAGGCCC
TGTTGAAGATCCTGGAGGGCACCACGGCGTCGGTCCCGCCGCAGGGCGGCCGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTCCTGTTCATCGTGGGCGGCGCCTTCTCCGGCCTGGAGAAGATCATCGAATCCCGGGCCGGCGC
GAAGGGCATCGGCTTCGGCGCGACGATCCGCTCCAAGCGCGAGCTGGAGTCCAAGGACCAGTTCGAGGCCGTCATGCCGG
AGGACCTGGTCAAGTTCGGCATGATCCCGGAGTTCATCGGCCGTCTGCCCGTCATCACCTCGGTCCACAACCTGGACCGT
GAGGCACTGCTCCAGATCCTCATCGAGCCGCGCAACGCGCTGGTGAAGCAGTACCAGCGCCTGTTCGAACTCGACGGCGT
GGAGCTGGACTTCGAGCGCGAGGCCCTCGAAGCCATCGCCGACCAGGCCATCCTCCGCCAGACCGGCGCGCGCGGCCTGC
GCGCCATCATGGAGGAGGTCCTGATGTCGGTCATGTACGAGGTCCCGTCCCGCAAGGACGTCGCCCGAGTCGTCATCACG
GCCGACGTGGTCCGCTCCAACGTCAACCCGACCCTGATCCCCCGGGACGCGCGGGGGCGGGGACCGGGGGAGCAGAAGAC
GGCGTAA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

3D structure

• AlphaFold DB: C9Z7F2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.687	93.925	0.589
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.501	96.028	0.523