Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   ETA10_RS12485 Genome accession   NZ_CP035397
Coordinates   2325427..2325810 (-) Length   127 a.a.
NCBI ID   WP_046160582.1    Uniprot ID   A0AA96UKP5
Organism   Bacillus subtilis strain SRCM103773     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2320427..2330810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA10_RS12445 (ETA10_12445) sinI 2321360..2321533 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  ETA10_RS12450 (ETA10_12450) sinR 2321567..2321902 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  ETA10_RS12455 (ETA10_12455) tasA 2321995..2322780 (-) 786 WP_014480250.1 biofilm matrix protein TasA -
  ETA10_RS12460 (ETA10_12460) sipW 2322844..2323416 (-) 573 WP_003230181.1 signal peptidase I SipW -
  ETA10_RS12465 (ETA10_12465) tapA 2323400..2324161 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  ETA10_RS12470 (ETA10_12470) yqzG 2324433..2324759 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  ETA10_RS12475 (ETA10_12475) spoIITA 2324801..2324980 (-) 180 WP_029726723.1 YqzE family protein -
  ETA10_RS12480 (ETA10_12480) comGG 2325052..2325426 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  ETA10_RS12485 (ETA10_12485) comGF 2325427..2325810 (-) 384 WP_046160582.1 ComG operon protein ComGF Machinery gene
  ETA10_RS12490 (ETA10_12490) comGE 2325836..2326183 (-) 348 WP_046160583.1 ComG operon protein 5 Machinery gene
  ETA10_RS12495 (ETA10_12495) comGD 2326167..2326598 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  ETA10_RS12500 (ETA10_12500) comGC 2326588..2326884 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  ETA10_RS12505 (ETA10_12505) comGB 2326898..2327935 (-) 1038 WP_029317912.1 comG operon protein ComGB Machinery gene
  ETA10_RS12510 (ETA10_12510) comGA 2327922..2328992 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  ETA10_RS12515 (ETA10_12515) - 2329204..2329401 (-) 198 WP_046160584.1 CBS domain-containing protein -
  ETA10_RS12520 (ETA10_12520) corA 2329403..2330356 (-) 954 WP_015483432.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14306.38 Da        Isoelectric Point: 5.5289

>NTDB_id=339944 ETA10_RS12485 WP_046160582.1 2325427..2325810(-) (comGF) [Bacillus subtilis strain SRCM103773]
MLISGSLAAIFHLFLSRQQEHDGFTQQEWMISIEQMMNECKESQAVKTAEHGSVLICTNLSGQDIRFDIYQSMIRKRVDG
KGHVPILDHITAMKADIENGVVLLKIESEDQKVYQTAFPVYSYLGGG

Nucleotide


Download         Length: 384 bp        

>NTDB_id=339944 ETA10_RS12485 WP_046160582.1 2325427..2325810(-) (comGF) [Bacillus subtilis strain SRCM103773]
TTGCTCATATCAGGATCGTTAGCTGCGATTTTCCATCTGTTTTTGTCTCGACAGCAGGAACATGACGGTTTCACACAGCA
AGAATGGATGATTTCGATAGAACAGATGATGAATGAATGCAAGGAGTCACAGGCAGTTAAGACAGCCGAGCATGGGAGCG
TGTTAATCTGCACCAATCTTTCCGGACAAGACATCCGTTTTGACATTTATCAATCAATGATAAGAAAAAGAGTGGATGGT
AAAGGGCATGTTCCGATTTTAGATCATATTACTGCCATGAAAGCTGATATTGAAAATGGTGTTGTTTTGCTGAAAATTGA
GAGTGAGGACCAAAAAGTGTATCAAACTGCTTTTCCAGTCTATTCGTATTTAGGAGGGGGGTGA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(16-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Bacillus subtilis subsp. subtilis str. 168

98.425

100

0.984

Multiple sequence alignment