Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   F3J96_RS23510 Genome accession   NZ_CP043950
Coordinates   4699081..4699713 (+) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain ST95-32     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4694081..4704713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3J96_RS23485 (F3J96_23490) yheS 4694250..4696163 (+) 1914 WP_000634747.1 ABC transporter ATP-binding protein -
  F3J96_RS23490 (F3J96_23495) yheT 4696163..4697185 (+) 1023 WP_000057415.1 hydrolase -
  F3J96_RS23495 (F3J96_23500) yheU 4697179..4697397 (+) 219 WP_000907086.1 YheU family protein -
  F3J96_RS23500 (F3J96_23505) prkB 4697451..4698320 (+) 870 WP_001274684.1 phosphoribulokinase -
  F3J96_RS23505 (F3J96_23510) yhfA 4698375..4698779 (-) 405 WP_001148908.1 OsmC family protein -
  F3J96_RS23510 (F3J96_23515) crp 4699081..4699713 (+) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  F3J96_RS23515 (F3J96_23520) yhfK 4699764..4701854 (+) 2091 WP_001304921.1 YccS/YhfK family putative transporter -
  F3J96_RS23520 (F3J96_23525) argD 4701921..4703141 (-) 1221 WP_000963803.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  F3J96_RS23525 (F3J96_23530) pabA 4703227..4703790 (-) 564 WP_000601853.1 aminodeoxychorismate synthase component 2 -
  F3J96_RS23530 (F3J96_23535) fic 4703822..4704424 (-) 603 WP_001280656.1 putative adenosine monophosphate-protein transferase Fic -
  F3J96_RS23535 (F3J96_23540) yhfG 4704414..4704581 (-) 168 WP_000736858.1 YhfG family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=339678 F3J96_RS23510 WP_000242755.1 4699081..4699713(+) (crp) [Escherichia coli strain ST95-32]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=339678 F3J96_RS23510 WP_000242755.1 4699081..4699713(+) (crp) [Escherichia coli strain ST95-32]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCGGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467