Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ES965_RS18335 Genome accession   NZ_CP035391
Coordinates   3507825..3508514 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain SRCM103689     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3502825..3513514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES965_RS18300 (ES965_18300) flgN 3503005..3503487 (-) 483 WP_077671017.1 flagellar protein FlgN -
  ES965_RS18305 (ES965_18305) flgM 3503503..3503769 (-) 267 WP_024572695.1 flagellar biosynthesis anti-sigma factor FlgM -
  ES965_RS18310 (ES965_18310) yvyF 3503850..3504269 (-) 420 WP_024572694.1 TIGR03826 family flagellar region protein -
  ES965_RS18315 (ES965_18315) comFC 3504343..3505065 (-) 723 WP_024572693.1 comF operon protein ComFC Machinery gene
  ES965_RS18320 (ES965_18320) comFB 3505029..3505325 (-) 297 WP_015483764.1 late competence protein ComFB -
  ES965_RS18325 (ES965_18325) comFA 3505385..3506776 (-) 1392 WP_124059234.1 ATP-dependent helicase ComFA Machinery gene
  ES965_RS18330 (ES965_18330) fakBA 3506882..3507727 (-) 846 WP_003227986.1 DegV family protein -
  ES965_RS18335 (ES965_18335) degU 3507825..3508514 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ES965_RS18340 (ES965_18340) degS 3508597..3509754 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  ES965_RS18345 (ES965_18345) yvyE 3509971..3510624 (+) 654 WP_003227979.1 YigZ family protein -
  ES965_RS18350 (ES965_18350) tagV 3510624..3511799 (+) 1176 WP_017695311.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  ES965_RS18355 (ES965_18355) tagO 3511872..3512948 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=339653 ES965_RS18335 WP_003219701.1 3507825..3508514(-) (degU) [Bacillus subtilis strain SRCM103689]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=339653 ES965_RS18335 WP_003219701.1 3507825..3508514(-) (degU) [Bacillus subtilis strain SRCM103689]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment