Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ES965_RS18315 Genome accession   NZ_CP035391
Coordinates   3504343..3505065 (-) Length   240 a.a.
NCBI ID   WP_024572693.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103689     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3499343..3510065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES965_RS18280 (ES965_18280) fliW 3499482..3499913 (-) 432 WP_124059229.1 flagellar assembly protein FliW -
  ES965_RS18285 (ES965_18285) yviE 3499934..3500509 (-) 576 WP_124059230.1 DUF6470 family protein -
  ES965_RS18290 (ES965_18290) flgL 3500556..3501452 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  ES965_RS18295 (ES965_18295) flgK 3501463..3502986 (-) 1524 WP_124059232.1 flagellar hook-associated protein FlgK -
  ES965_RS18300 (ES965_18300) flgN 3503005..3503487 (-) 483 WP_077671017.1 flagellar protein FlgN -
  ES965_RS18305 (ES965_18305) flgM 3503503..3503769 (-) 267 WP_024572695.1 flagellar biosynthesis anti-sigma factor FlgM -
  ES965_RS18310 (ES965_18310) yvyF 3503850..3504269 (-) 420 WP_024572694.1 TIGR03826 family flagellar region protein -
  ES965_RS18315 (ES965_18315) comFC 3504343..3505065 (-) 723 WP_024572693.1 comF operon protein ComFC Machinery gene
  ES965_RS18320 (ES965_18320) comFB 3505029..3505325 (-) 297 WP_015483764.1 late competence protein ComFB -
  ES965_RS18325 (ES965_18325) comFA 3505385..3506776 (-) 1392 WP_124059234.1 ATP-dependent helicase ComFA Machinery gene
  ES965_RS18330 (ES965_18330) fakBA 3506882..3507727 (-) 846 WP_003227986.1 DegV family protein -
  ES965_RS18335 (ES965_18335) degU 3507825..3508514 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ES965_RS18340 (ES965_18340) degS 3508597..3509754 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27505.79 Da        Isoelectric Point: 9.3154

>NTDB_id=339651 ES965_RS18315 WP_024572693.1 3504343..3505065(-) (comFC) [Bacillus subtilis strain SRCM103689]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVASFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=339651 ES965_RS18315 WP_024572693.1 3504343..3505065(-) (comFC) [Bacillus subtilis strain SRCM103689]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTATTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACGAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACTTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGGCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.75

100

0.988

Multiple sequence alignment