Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ES965_RS16390 Genome accession   NZ_CP035391
Coordinates   3122211..3122855 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103689     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3117211..3127855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES965_RS16355 (ES965_16355) mrpB 3118403..3118834 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  ES965_RS16360 (ES965_16360) mrpC 3118834..3119175 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  ES965_RS16365 (ES965_16365) mrpD 3119168..3120649 (+) 1482 WP_124059000.1 Na+/H+ antiporter subunit D -
  ES965_RS16370 (ES965_16370) mrpE 3120655..3121131 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  ES965_RS16375 (ES965_16375) mrpF 3121131..3121415 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  ES965_RS16380 (ES965_16380) mnhG 3121399..3121773 (+) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  ES965_RS16385 (ES965_16385) yuxO 3121812..3122192 (-) 381 WP_014477831.1 hotdog fold thioesterase -
  ES965_RS16390 (ES965_16390) comA 3122211..3122855 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  ES965_RS16395 (ES965_16395) comP 3122936..3125245 (-) 2310 WP_129092677.1 two-component system sensor histidine kinase ComP Regulator
  ES965_RS16400 (ES965_16400) comX 3125260..3125427 (-) 168 WP_100505762.1 competence pheromone ComX Regulator
  ES965_RS16405 (ES965_16405) comQ 3125411..3126313 (-) 903 WP_129092678.1 polyprenyl synthetase family protein Regulator
  ES965_RS16410 (ES965_16410) degQ 3126498..3126638 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  ES965_RS21865 - 3126860..3126922 (+) 63 Protein_3156 hypothetical protein -
  ES965_RS16415 (ES965_16415) - 3127100..3127468 (+) 369 WP_129092679.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=339644 ES965_RS16390 WP_003220716.1 3122211..3122855(-) (comA) [Bacillus subtilis strain SRCM103689]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=339644 ES965_RS16390 WP_003220716.1 3122211..3122855(-) (comA) [Bacillus subtilis strain SRCM103689]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTCTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTTAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment