Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ES815_RS11225 Genome accession   NZ_CP035382
Coordinates   2147536..2148066 (+) Length   176 a.a.
NCBI ID   WP_032615999.1    Uniprot ID   A0A3E1ZQY9
Organism   Leclercia adecarboxylata strain R25     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2142536..2153066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES815_RS11205 (ES815_11280) aphA 2142864..2143577 (+) 714 WP_142487854.1 acid phosphatase AphA -
  ES815_RS11210 (ES815_11285) - 2143688..2144104 (+) 417 WP_142487855.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ES815_RS11215 (ES815_11290) - 2144107..2144460 (+) 354 WP_142490045.1 MmcQ/YjbR family DNA-binding protein -
  ES815_RS11220 (ES815_11295) uvrA 2144464..2147286 (-) 2823 WP_142487856.1 excinuclease ABC subunit UvrA -
  ES815_RS11225 (ES815_11305) ssb 2147536..2148066 (+) 531 WP_032615999.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ES815_RS11230 (ES815_11310) - 2148131..2148412 (-) 282 WP_106993942.1 YjcB family protein -
  ES815_RS11235 (ES815_11315) - 2149024..2150352 (+) 1329 WP_260609696.1 GGDEF domain-containing protein -
  ES815_RS11240 (ES815_11320) - 2150691..2152277 (+) 1587 WP_142487858.1 EAL domain-containing protein -
  ES815_RS11245 (ES815_11325) soxS 2152274..2152600 (-) 327 WP_039031951.1 superoxide response transcriptional regulator SoxS -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18849.87 Da        Isoelectric Point: 5.2456

>NTDB_id=339451 ES815_RS11225 WP_032615999.1 2147536..2148066(+) (ssb) [Leclercia adecarboxylata strain R25]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQQGGWGQPQQPQGGNQFSGGAQSRPQQQPSAP
AQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=339451 ES815_RS11225 WP_032615999.1 2147536..2148066(+) (ssb) [Leclercia adecarboxylata strain R25]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
TGGTGCAGTGGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAATATCTGCGTAAAGGCTCCCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGCAGAAAAATACACCACCGAAGTGGTGGTCAACGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGCCAGCAGCAGCAGGGCGGTTGGG
GTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCACAGTCCCGTCCGCAGCAGCAGCCGTCTGCACCG
GCGCAGTCCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3E1ZQY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.784
  ssb Glaesserella parasuis strain SC1401

56.684

100

0.602
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472

Multiple sequence alignment