Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   ERO09_RS02985 Genome accession   NZ_CP035368
Coordinates   617053..617778 (+) Length   241 a.a.
NCBI ID   WP_172622001.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain LC_1315_18     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 612053..622778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ERO09_RS02960 (ERO09_02950) thiP 612183..613787 (+) 1605 WP_128787082.1 thiamine/thiamine pyrophosphate ABC transporter permease ThiP -
  ERO09_RS02965 (ERO09_02955) thiQ 613780..614409 (+) 630 WP_128787083.1 thiamine ABC transporter ATP-binding protein -
  ERO09_RS02970 (ERO09_02960) bioB 614484..615500 (+) 1017 WP_049355387.1 biotin synthase BioB -
  ERO09_RS02975 (ERO09_02965) suhB 615546..616346 (-) 801 WP_128787084.1 inositol-1-monophosphatase -
  ERO09_RS02980 (ERO09_02970) comN 616547..617065 (+) 519 WP_128787085.1 prepilin-type cleavage/methylation domain-containing protein Machinery gene
  ERO09_RS02985 (ERO09_02975) comO 617053..617778 (+) 726 WP_172622001.1 type II secretion system protein J Machinery gene
  ERO09_RS02990 (ERO09_02980) comP 617775..618461 (+) 687 WP_172622002.1 DUF2572 family protein Machinery gene
  ERO09_RS02995 (ERO09_02985) comQ 618475..618741 (+) 267 WP_049364346.1 DUF5374 domain-containing protein Machinery gene
  ERO09_RS03000 (ERO09_02990) recC 618779..622138 (+) 3360 WP_128787087.1 exodeoxyribonuclease V subunit gamma -
  ERO09_RS03005 (ERO09_02995) nrdR 622216..622665 (+) 450 WP_005695670.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27171.37 Da        Isoelectric Point: 7.9294

>NTDB_id=339349 ERO09_RS02985 WP_172622001.1 617053..617778(+) (comO) [Haemophilus parainfluenzae strain LC_1315_18]
MYKMKPLKGETLVSLLISLGLSALLLLLVAQFYAQTQQQNQRLMLQLKLQAELQRTIQLIGKDLRRVGFRAVNQKLIEDN
LALFELDEKGTAITIAQADNAQSNSCVLFFYDLNSNGCIGEKYTKNTCVNGVKNVAKNIEKELFGYKLNGKMIETKQTYK
NAVNADCRSEECQRALMQSTCNAGGGWTDLLDEKEFEISQLRFDWLKAGKGIEIKLAGNLTTHKHIQYETSLVVPLLNQE
E

Nucleotide


Download         Length: 726 bp        

>NTDB_id=339349 ERO09_RS02985 WP_172622001.1 617053..617778(+) (comO) [Haemophilus parainfluenzae strain LC_1315_18]
ATGTACAAGATGAAACCATTAAAAGGCGAAACATTGGTGAGCTTGTTGATTTCACTCGGCTTATCCGCTTTATTATTGCT
ATTGGTTGCACAATTTTATGCCCAAACTCAACAGCAAAATCAGCGTTTAATGTTACAACTCAAATTACAAGCGGAATTAC
AACGTACCATTCAACTCATCGGGAAAGATCTGCGTCGCGTAGGTTTTCGAGCTGTAAACCAAAAACTCATTGAAGATAAT
CTGGCTTTATTCGAATTAGACGAAAAGGGCACTGCAATAACCATTGCTCAAGCAGACAATGCACAATCAAATAGCTGTGT
CTTATTTTTTTATGATTTGAATAGTAATGGTTGTATTGGTGAAAAATACACAAAAAACACTTGCGTGAATGGCGTTAAAA
ATGTGGCGAAAAATATCGAAAAGGAGCTATTTGGTTACAAACTTAACGGCAAAATGATCGAAACCAAACAAACTTATAAA
AATGCGGTAAATGCAGATTGTCGCTCGGAAGAATGTCAGCGTGCTCTAATGCAATCTACTTGTAATGCTGGTGGTGGATG
GACAGATTTATTGGATGAAAAAGAGTTTGAGATTTCTCAATTACGTTTTGATTGGTTAAAGGCAGGGAAAGGGATTGAAA
TCAAACTTGCGGGAAATCTTACAACACATAAGCATATTCAATATGAAACTTCGCTTGTGGTGCCTTTACTAAATCAAGAA
GAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

62.821

97.095

0.61

Multiple sequence alignment