Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   EKL02_RS04595 Genome accession   NZ_CP035311
Coordinates   1019948..1021471 (+) Length   507 a.a.
NCBI ID   WP_128900945.1    Uniprot ID   A0A410UQ82
Organism   Janthinobacterium sp. 17J80-10     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1014948..1026471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKL02_RS04575 (EKL02_04575) ffh 1015580..1016947 (-) 1368 WP_128900942.1 signal recognition particle protein -
  EKL02_RS04580 (EKL02_04580) ccsA 1017090..1017902 (+) 813 WP_128900943.1 cytochrome c biogenesis protein CcsA -
  EKL02_RS04585 (EKL02_04585) - 1017899..1018150 (+) 252 WP_128900944.1 PP0621 family protein -
  EKL02_RS04590 (EKL02_04590) - 1018162..1019925 (+) 1764 WP_241687781.1 ATP-binding protein -
  EKL02_RS04595 (EKL02_04595) pilR 1019948..1021471 (+) 1524 WP_128900945.1 sigma-54 dependent transcriptional regulator Regulator
  EKL02_RS04600 (EKL02_04600) ampD 1021458..1022084 (+) 627 WP_128900946.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  EKL02_RS04605 (EKL02_04605) - 1022426..1025356 (+) 2931 WP_128900947.1 ribonucleoside-diphosphate reductase subunit alpha -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54246.51 Da        Isoelectric Point: 4.9354

>NTDB_id=339263 EKL02_RS04595 WP_128900945.1 1019948..1021471(+) (pilR) [Janthinobacterium sp. 17J80-10]
MSVPRILVIDDEPDLRELVEITLLKMGLDVDSADRLATARALLQQHEYALVLTDMRLPDGMGIELVREVTGACRNTPIAV
ITAFGSADNAVTALKAGAFDYLSKPVGLDQLRLLVQSALRISTVAGGGGKAPAVAGGGISLRLMGQSSLMQDLRTQIARL
ARSMAPIAITGESGSGKELAARDIHAQSARADKAFIAVNCGAIPESLMEAEFFGYRKGAFTGAAEDRDGFFQAANGGTLL
LDEVADLPLAMQVKLLRAIQERRVRKVGATVEEPVDVRLISATHQDLAECVEKGKFRQDLYYRLNVIELRLPSLRERLED
VGLLAETILAKLAGPGMARVTLAPAALAALRGYSFPGNVRELENILERAMAFANDDVIEVADLALKAAGMVPSGLAAAAP
AAAPEVAEPMLQSAESTFAGDAPADTVSVRFHMPPTPDVAEPLGAAVAELPPLPASLPDHLDQVEREIICRALAQTRFNR
TQAAELLGISFRQLRYRMQRLSIHEPE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=339263 EKL02_RS04595 WP_128900945.1 1019948..1021471(+) (pilR) [Janthinobacterium sp. 17J80-10]
ATGAGCGTACCCCGCATACTGGTGATCGACGACGAGCCCGATTTGCGCGAGCTGGTCGAGATAACCTTGCTCAAAATGGG
CCTGGATGTGGATAGTGCCGATCGCCTGGCAACCGCGCGCGCGCTGCTCCAGCAGCACGAATATGCGCTGGTGCTGACCG
ACATGCGGCTGCCGGACGGCATGGGCATTGAGTTGGTGCGGGAAGTGACTGGTGCCTGCCGCAATACCCCGATTGCCGTC
ATTACCGCTTTCGGCAGTGCCGACAATGCCGTCACCGCCCTGAAAGCCGGCGCTTTTGATTACCTGAGCAAACCGGTCGG
GCTGGACCAGTTGCGTTTGCTGGTACAGTCGGCTTTGCGCATCAGTACAGTTGCAGGGGGGGGCGGCAAGGCGCCCGCGG
TTGCCGGCGGCGGCATCAGCCTGCGCCTGATGGGGCAATCCTCGCTGATGCAGGATTTGCGTACGCAAATAGCGCGTCTG
GCTCGCAGCATGGCACCGATTGCCATCACCGGCGAGTCCGGCAGCGGCAAGGAGCTGGCGGCGCGCGATATCCATGCGCA
AAGCGCTCGTGCCGACAAGGCATTCATTGCCGTGAATTGCGGCGCCATACCCGAATCCCTCATGGAGGCGGAATTTTTTG
GCTATCGCAAGGGCGCGTTTACCGGAGCGGCCGAGGATCGCGATGGTTTTTTCCAGGCAGCCAATGGCGGTACGCTCCTG
CTGGACGAGGTGGCGGACTTGCCCCTGGCAATGCAGGTAAAACTGTTGCGTGCCATTCAGGAGCGGCGCGTGCGCAAGGT
CGGCGCGACGGTCGAAGAGCCGGTCGATGTGCGCTTGATCAGTGCGACGCACCAGGATCTGGCGGAGTGCGTTGAAAAAG
GCAAGTTTCGCCAGGATTTGTATTACCGTCTGAACGTGATTGAATTGCGCCTGCCATCGCTGCGGGAGCGGCTGGAGGAT
GTCGGTTTGCTGGCCGAGACGATCCTGGCAAAACTGGCAGGGCCAGGCATGGCCAGGGTGACACTGGCGCCAGCCGCACT
CGCAGCGCTGCGCGGCTACTCTTTCCCGGGCAATGTGCGCGAACTGGAAAATATTCTGGAACGCGCCATGGCATTTGCCA
ATGACGATGTCATCGAAGTGGCCGACCTGGCCTTGAAAGCTGCCGGGATGGTGCCTTCCGGGCTTGCTGCCGCAGCGCCG
GCGGCCGCGCCCGAGGTCGCGGAACCGATGCTGCAGTCAGCTGAGTCAACGTTTGCCGGGGACGCTCCTGCCGATACCGT
ATCGGTACGCTTCCACATGCCGCCAACGCCCGACGTGGCCGAGCCGCTCGGGGCGGCCGTAGCCGAGTTGCCGCCCTTGC
CGGCCAGCCTGCCGGATCATCTGGACCAGGTCGAGCGCGAAATCATTTGTCGCGCGCTTGCGCAGACCCGTTTCAATCGT
ACGCAAGCCGCGGAATTGCTTGGAATTAGCTTTCGCCAGTTGCGTTACCGTATGCAGAGGTTAAGTATTCATGAACCGGA
ATGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(461-501)

Response regulator receiver domain (Response_reg)

(6-115)

Sigma-54 interaction domain (Sigma54_activat)

(143-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A410UQ82

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

50.794

99.408

0.505
  pilR Acinetobacter baumannii strain A118

43.254

99.408

0.43

Multiple sequence alignment