Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   F1719_RS17620 Genome accession   NZ_CP043852
Coordinates   3569629..3570219 (-) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli ATCC 8739     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3564629..3575219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1719_RS17605 (F1719_18030) uhpT 3565269..3566660 (-) 1392 WP_000879194.1 hexose-6-phosphate:phosphate antiporter -
  F1719_RS17610 (F1719_18035) uhpC 3566798..3568117 (-) 1320 WP_000936566.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  F1719_RS17615 (F1719_18040) uhpB 3568127..3569629 (-) 1503 WP_001295243.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  F1719_RS17620 (F1719_18045) letA 3569629..3570219 (-) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  F1719_RS17625 (F1719_18050) ilvN 3570294..3570584 (-) 291 WP_001181706.1 acetolactate synthase small subunit -
  F1719_RS17630 (F1719_18055) ilvB 3570588..3572276 (-) 1689 WP_000168475.1 acetolactate synthase large subunit -
  F1719_RS17635 (F1719_18060) ivbL 3572382..3572480 (-) 99 WP_001300753.1 ilvB operon leader peptide IvbL -
  F1719_RS17640 (F1719_18065) tisB 3573045..3573134 (+) 90 WP_000060506.1 type I toxin-antitoxin system toxin TisB -
  F1719_RS23580 ysdE 3573258..3573332 (-) 75 WP_211180519.1 protein YsdE -
  F1719_RS17645 (F1719_18070) emrD 3573414..3574598 (+) 1185 WP_000828746.1 multidrug efflux MFS transporter EmrD -
  F1719_RS17650 (F1719_18075) yidF 3574606..3575103 (-) 498 WP_000148063.1 radical SAM protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=339189 F1719_RS17620 WP_000633668.1 3569629..3570219(-) (letA) [Escherichia coli ATCC 8739]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=339189 F1719_RS17620 WP_000633668.1 3569629..3570219(-) (letA) [Escherichia coli ATCC 8739]
ATGATCACCGTTGCCCTTATAGACGATCACCTCATCGTCCGCTCCGGCTTTGCGCAGCTGCTGGGGCTGGAACCTGATTT
GCAGGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCCGATATCTCCGGTCTGGAGCTGCTAAGCCAGCTGCCGAAAGGTATGGCGACGATTATGCTCTCCGTT
CACGACAGTCCTGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCACGCGGCTTTCTTTCCAAACGCTGTAGTCCGGATGA
ACTCATTGCTGCGGTGCATACGGTTGCCACGGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GTCAGGACCCGCTAACCAAACGTGAACGCCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCCGCC
GAACTGGGCTTGTCACCGAAAACGGTACACGTCCATCGCGCCAATCTGATGGAAAAACTGGGCGTCAGTAACGACGTAGA
GCTGGCGCGCCGCATGTTTGATGGCTGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(136-191)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393
  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393
  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378