Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   VC395_RS02300 Genome accession   NC_012582
Coordinates   471112..471756 (-) Length   214 a.a.
NCBI ID   WP_001188316.1    Uniprot ID   Q9KUW3
Organism   Vibrio cholerae O395     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 466112..476756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VC395_RS02290 (VC395_0438) uvrA 467089..469911 (-) 2823 WP_000357704.1 excinuclease ABC subunit UvrA -
  VC395_RS02295 (VC395_0439) galU 470067..470939 (-) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  VC395_RS02300 (VC395_0440) qstR 471112..471756 (-) 645 WP_001188316.1 LuxR C-terminal-related transcriptional regulator Regulator
  VC395_RS02305 (VC395_0441) ssb 472048..472581 (+) 534 WP_000168289.1 single-stranded DNA-binding protein Machinery gene
  VC395_RS02310 (VC395_0442) csrD 472759..474717 (+) 1959 WP_000216141.1 RNase E specificity factor CsrD -
  VC395_RS02315 (VC395_0443) - 474730..476169 (+) 1440 WP_000743246.1 PilN domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24736.58 Da        Isoelectric Point: 9.6461

>NTDB_id=33907 VC395_RS02300 WP_001188316.1 471112..471756(-) (qstR) [Vibrio cholerae O395]
MQRANYARTIYLLTTQPKALHPSIQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENGLIRQQLGPLKLTSPYFE
TILFNVEKRLRTEDLLTFGNLKGLFYANEDTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQSHQVQATVDLTAREI
QILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=33907 VC395_RS02300 WP_001188316.1 471112..471756(-) (qstR) [Vibrio cholerae O395]
ATGCAACGAGCCAACTATGCACGCACGATTTATTTATTAACGACACAGCCAAAAGCGTTACATCCCAGTATTCAAGCCGC
CATTGAGCAGTTGAATCTGCCCGTCCCGGTGATTGAACCAGAACGCTTATTGCGCGAGTATCAATCCGATAAACACAAAA
TATTGTTGCTCGACCATGCGGAAAATGGCCTGATTCGCCAGCAATTGGGTCCCCTAAAGCTTACCAGCCCGTACTTCGAA
ACCATCTTGTTTAATGTCGAGAAACGGTTAAGAACAGAAGATCTGCTCACTTTTGGCAACCTCAAAGGTCTGTTTTATGC
CAATGAAGACACAGGCTTTATTGCCCACGGTCTTGGGGAGATCATTAATGGCCAAAACTGGCTACCTCGCCACGTCAGCA
GTCAGTTGCTGCATTACTATCGTTACGCTTTCCAAAGCCATCAAGTTCAAGCCACGGTCGATTTGACTGCACGTGAAATT
CAGATCCTGCGCTGTTTACAAACTGGCGCATCGAATATGCAAATCGCTGAGAATTTATTTATTAGTGAGTTCACGGTGAA
ATCGCATCTTTATCAGATATTTAAAAAGCTAAACGTGAAAAATCGAGTCAAAGCGATCGCTTGGGTTAATCAAAATTTAC
TGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KUW3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

100

100

1
  qstR Vibrio parahaemolyticus RIMD 2210633

52.093

100

0.523
  qstR Vibrio campbellii strain DS40M4

52.336

100

0.523

Multiple sequence alignment