Detailed information NTG0339036

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: EQ030_RS11830
• Genome accession: NZ_CP035294
• Coordinates: 2421286..2421798 (-)
• Length: 170 a.a.
• NCBI ID: WP_002484307.1
• Uniprot ID: -
• Organism: Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292 strain ATCC 15305
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2416286..2426798

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EQ030_RS11785 (EQ030_11790)	-	2416582..2417196 (-)	615	WP_011303954.1	FMN-binding negative transcriptional regulator	-
EQ030_RS11790 (EQ030_11795)	-	2417238..2417573 (-)	336	WP_011303955.1	hypothetical protein	-
EQ030_RS11795 (EQ030_11800)	-	2417677..2418021 (-)	345	WP_011303956.1	DUF4260 domain-containing protein	-
EQ030_RS11805 (EQ030_11810)	-	2418615..2419028 (+)	414	WP_011303958.1	YxeA family protein	-
EQ030_RS11810 (EQ030_11815)	-	2419172..2419444 (-)	273	WP_011303959.1	hypothetical protein	-
EQ030_RS13040	-	2419565..2419687 (-)	123	WP_011303960.1	hypothetical protein	-
EQ030_RS13045	-	2419868..2419990 (+)	123	WP_011303961.1	hypothetical protein	-
EQ030_RS11815 (EQ030_11820)	-	2420264..2420470 (+)	207	WP_011303963.1	hypothetical protein	-
EQ030_RS11820 (EQ030_11825)	-	2420495..2420716 (+)	222	WP_011303964.1	hypothetical protein	-
EQ030_RS12845	-	2420731..2420871 (+)	141	WP_011303965.1	hypothetical protein	-
EQ030_RS11825 (EQ030_11830)	rpsR	2420994..2421236 (-)	243	WP_002484306.1	30S ribosomal protein S18	-
EQ030_RS11830 (EQ030_11835)	ssbA	2421286..2421798 (-)	513	WP_002484307.1	single-stranded DNA-binding protein	Machinery gene
EQ030_RS11835 (EQ030_11840)	rpsF	2421817..2422122 (-)	306	WP_011303966.1	30S ribosomal protein S6	-
EQ030_RS11840 (EQ030_11845)	-	2422544..2423350 (+)	807	WP_011303967.1	GH25 family lysozyme	-
EQ030_RS11845 (EQ030_11850)	ychF	2423513..2424610 (-)	1098	WP_011303968.1	redox-regulated ATPase YchF	-
EQ030_RS11850 (EQ030_11855)	-	2424610..2424825 (-)	216	WP_002484311.1	DUF951 domain-containing protein	-
EQ030_RS11855 (EQ030_11860)	-	2424854..2425732 (-)	879	WP_011303969.1	mechanosensitive ion channel family protein	-

Sequence

Protein

• Length: 170 a.a.
• Molecular weight: 18948.48 Da
• Isoelectric Point: 4.9163

>NTDB_id=339036 EQ030_RS11830 WP_002484307.1 2421286..2421798(-) (ssbA) [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292 strain ATCC 15305]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNQNQRHGQEGNNNNFQNFGGQQSGQNTSSYQSNNNNNSSNNNQSDNPFANANGP
IDISDDDLPF

Nucleotide

• Length: 513 bp

>NTDB_id=339036 EQ030_RS11830 WP_002484307.1 2421286..2421798(-) (ssbA) [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292 strain ATCC 15305]
ATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACTAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC
GACTTTTACTCTAGCAGTAAATCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCGGATTTCATTAACTGTGTCGTTT
TTAGAAAACAAGCAGAGAATGTTAACAACTACTTATTTAAAGGTAGTTTAGCTGGCGTTGACGGTCGCATTCAATCACGT
AGCTATGAAAACCAAGAAGGTCGTCGTATATTTGTGACTGAAGTGGTTTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TCAAAACCAACGTCATGGTCAAGAAGGAAATAACAATAATTTCCAAAACTTTGGCGGACAACAATCAGGACAAAATACGT
CATCTTATCAAAGTAATAACAACAATAACTCATCAAACAATAATCAATCTGATAACCCATTTGCAAATGCAAACGGACCA
ATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	63.953	100	0.647
ssb	Latilactobacillus sakei subsp. sakei 23K	57.225	100	0.582
ssbB	Bacillus subtilis subsp. subtilis str. 168	59.091	64.706	0.382