Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | EQ030_RS03880 | Genome accession | NZ_CP035294 |
| Coordinates | 814360..814779 (+) | Length | 139 a.a. |
| NCBI ID | WP_011302684.1 | Uniprot ID | - |
| Organism | Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292 strain ATCC 15305 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 809360..819779
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EQ030_RS03850 (EQ030_03855) | atpD | 809477..810889 (+) | 1413 | WP_002482726.1 | F0F1 ATP synthase subunit beta | - |
| EQ030_RS03855 (EQ030_03860) | - | 810909..811313 (+) | 405 | WP_002482727.1 | F0F1 ATP synthase subunit epsilon | - |
| EQ030_RS03860 (EQ030_03865) | - | 811575..811808 (+) | 234 | WP_011302682.1 | DUF1146 family protein | - |
| EQ030_RS03865 (EQ030_03870) | murA | 811915..813180 (+) | 1266 | WP_011302683.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| EQ030_RS03870 (EQ030_03875) | fabZ | 813235..813672 (+) | 438 | WP_002482729.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| EQ030_RS03875 (EQ030_03880) | - | 813729..814169 (-) | 441 | WP_002482730.1 | YwpF-like family protein | - |
| EQ030_RS03880 (EQ030_03885) | ssb | 814360..814779 (+) | 420 | WP_011302684.1 | single-stranded DNA-binding protein | Machinery gene |
| EQ030_RS03885 (EQ030_03890) | - | 815205..815921 (+) | 717 | WP_011302685.1 | transglycosylase family protein | - |
| EQ030_RS03890 (EQ030_03895) | tenA | 816228..816917 (+) | 690 | WP_011302686.1 | thiaminase II | - |
| EQ030_RS03895 (EQ030_03900) | thiD | 816910..817731 (+) | 822 | WP_011302687.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| EQ030_RS03900 (EQ030_03905) | thiM | 817724..818515 (+) | 792 | WP_011302688.1 | hydroxyethylthiazole kinase | - |
| EQ030_RS03905 (EQ030_03910) | thiE | 818515..819153 (+) | 639 | WP_011302689.1 | thiamine phosphate synthase | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 16059.43 Da Isoelectric Point: 7.7651
>NTDB_id=339010 EQ030_RS03880 WP_011302684.1 814360..814779(+) (ssb) [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292 strain ATCC 15305]
MINNIVIVGRLTKDPKIYDKEEKKLATFCVAVSRNYKDKNQTPVCDYLFCKAFGKMATNIEKYTKQGSLVGITGQMQSHK
YEKEGQTHFVSEILIESIKFMSPQNKDKNDLLFEPFPLEHSQNAFKDINVQNNDIYEIV
MINNIVIVGRLTKDPKIYDKEEKKLATFCVAVSRNYKDKNQTPVCDYLFCKAFGKMATNIEKYTKQGSLVGITGQMQSHK
YEKEGQTHFVSEILIESIKFMSPQNKDKNDLLFEPFPLEHSQNAFKDINVQNNDIYEIV
Nucleotide
Download Length: 420 bp
>NTDB_id=339010 EQ030_RS03880 WP_011302684.1 814360..814779(+) (ssb) [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292 strain ATCC 15305]
ATGATTAATAACATTGTTATCGTAGGGCGACTAACTAAGGACCCTAAAATATATGATAAGGAGGAGAAAAAATTAGCTAC
ATTTTGTGTAGCTGTATCAAGGAACTATAAAGATAAGAATCAAACCCCGGTATGTGATTATTTATTTTGTAAAGCATTTG
GAAAAATGGCAACAAACATTGAGAAATATACGAAGCAAGGCTCACTTGTAGGTATAACAGGCCAAATGCAATCACATAAA
TATGAAAAAGAAGGTCAGACGCATTTTGTATCAGAAATACTTATTGAATCAATTAAATTCATGTCTCCACAAAACAAAGA
TAAAAATGATTTACTTTTTGAACCATTCCCGCTAGAGCATTCCCAAAATGCATTTAAAGACATTAACGTACAAAATAATG
ATATATATGAAATTGTATAA
ATGATTAATAACATTGTTATCGTAGGGCGACTAACTAAGGACCCTAAAATATATGATAAGGAGGAGAAAAAATTAGCTAC
ATTTTGTGTAGCTGTATCAAGGAACTATAAAGATAAGAATCAAACCCCGGTATGTGATTATTTATTTTGTAAAGCATTTG
GAAAAATGGCAACAAACATTGAGAAATATACGAAGCAAGGCTCACTTGTAGGTATAACAGGCCAAATGCAATCACATAAA
TATGAAAAAGAAGGTCAGACGCATTTTGTATCAGAAATACTTATTGAATCAATTAAATTCATGTCTCCACAAAACAAAGA
TAAAAATGATTTACTTTTTGAACCATTCCCGCTAGAGCATTCCCAAAATGCATTTAAAGACATTAACGTACAAAATAATG
ATATATATGAAATTGTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
60.87 |
99.281 |
0.604 |
| ssb | Staphylococcus aureus MW2 |
60.145 |
99.281 |
0.597 |