Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   EQM13_RS15370 Genome accession   NZ_CP035282
Coordinates   3191080..3191778 (+) Length   232 a.a.
NCBI ID   WP_206173016.1    Uniprot ID   -
Organism   Acidilutibacter cellobiosedens strain JN-28     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3186080..3196778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQM13_RS15350 (EQM13_15350) - 3187001..3188317 (-) 1317 WP_128753128.1 PD40 domain-containing protein -
  EQM13_RS15355 (EQM13_15355) - 3188480..3189217 (-) 738 WP_161567276.1 ABC transporter permease -
  EQM13_RS15360 (EQM13_15360) - 3189229..3190005 (-) 777 WP_161567277.1 ABC transporter permease -
  EQM13_RS15365 (EQM13_15365) - 3190022..3190927 (-) 906 WP_128753131.1 ABC transporter ATP-binding protein -
  EQM13_RS15370 (EQM13_15370) scnR 3191080..3191778 (+) 699 WP_206173016.1 response regulator transcription factor Regulator
  EQM13_RS15375 (EQM13_15375) - 3191783..3193177 (+) 1395 WP_128753132.1 sensor histidine kinase KdpD -
  EQM13_RS15380 (EQM13_15380) - 3193365..3194852 (-) 1488 WP_128753133.1 cobyric acid synthase -
  EQM13_RS15385 (EQM13_15385) - 3194976..3195548 (-) 573 WP_128753134.1 chromate transporter -
  EQM13_RS15390 (EQM13_15390) - 3195545..3196117 (-) 573 WP_071140689.1 chromate transporter -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26730.11 Da        Isoelectric Point: 7.1354

>NTDB_id=338903 EQM13_RS15370 WP_206173016.1 3191080..3191778(+) (scnR) [Acidilutibacter cellobiosedens strain JN-28]
MDYLKTKHILLVDDEKALLDLLQTILQEEGYTNIAKAKNMGEALNSFYEFKPDIIILDIMLPDGDGFQFLSKIRKLSDVP
VLFLSAKDAMNDQYQGFSLGADDYITKPFLPKDLVLRLQAVLRRTYKEKSETIVLKYSEIRFETGEIIKGKEVFVLTKKE
FSILQTLYQNSNRIVTIDGLCQAVWGDAYFGYENSLMAHIRRIREKIEKNPSCPESLITIKGLGYKLIVERR

Nucleotide


Download         Length: 699 bp        

>NTDB_id=338903 EQM13_RS15370 WP_206173016.1 3191080..3191778(+) (scnR) [Acidilutibacter cellobiosedens strain JN-28]
ATGGATTATCTTAAAACCAAACATATCCTTCTTGTTGACGACGAAAAAGCATTGTTAGATCTGCTTCAGACTATTTTGCA
AGAAGAAGGTTATACCAATATAGCAAAAGCAAAAAACATGGGTGAAGCTTTAAATAGTTTTTATGAGTTCAAACCGGACA
TAATTATTTTAGATATCATGCTGCCTGATGGAGACGGTTTTCAATTTCTAAGTAAAATCAGAAAATTATCGGATGTCCCT
GTTCTCTTTTTATCAGCAAAAGATGCCATGAACGATCAATATCAGGGTTTTTCATTAGGTGCGGATGATTACATTACAAA
ACCTTTTCTTCCCAAAGATTTGGTCCTCCGTCTTCAAGCTGTTCTCCGAAGAACTTATAAAGAAAAATCGGAAACTATAG
TTTTAAAATATTCGGAAATTCGATTTGAAACCGGAGAGATCATAAAGGGTAAAGAGGTTTTTGTTCTTACTAAAAAGGAA
TTTTCCATCCTTCAAACCTTATATCAAAATTCAAACCGTATTGTTACAATAGACGGCTTGTGTCAAGCTGTCTGGGGGGA
TGCTTATTTTGGATATGAAAACTCATTAATGGCACATATCAGAAGAATTCGTGAAAAAATAGAAAAAAACCCTTCCTGTC
CCGAATCCCTAATCACCATTAAGGGCTTAGGATATAAGCTAATTGTGGAAAGGAGATAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-227)

Response regulator receiver domain (Response_reg)

(9-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

52.838

98.707

0.522
  vicR Streptococcus mutans UA159

41.202

100

0.414
  micA Streptococcus pneumoniae Cp1015

41.667

98.276

0.409

Multiple sequence alignment