Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   F1748_RS11350 Genome accession   NZ_CP043821
Coordinates   2284299..2285726 (+) Length   475 a.a.
NCBI ID   WP_000980607.1    Uniprot ID   -
Organism   Escherichia coli strain RM10740     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2279299..2290726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1748_RS11320 (F1748_11345) pduU 2279676..2280026 (+) 351 WP_000211393.1 propanediol utilization microcompartment protein PduU -
  F1748_RS11325 (F1748_11350) - 2280031..2280474 (+) 444 WP_001189436.1 EutP/PduV family microcompartment system protein -
  F1748_RS11330 (F1748_11355) tmaR 2280575..2280904 (-) 330 WP_000450409.1 DUF496 family protein -
  F1748_RS11335 (F1748_11360) yeeA 2281076..2282134 (-) 1059 WP_001200891.1 FUSC family protein -
  F1748_RS11340 (F1748_11365) sbmC 2282332..2282805 (-) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  F1748_RS11345 (F1748_11370) dacD 2282924..2284090 (-) 1167 WP_001379902.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  F1748_RS11350 (F1748_11375) sbcB 2284299..2285726 (+) 1428 WP_000980607.1 exodeoxyribonuclease I Machinery gene
  F1748_RS11355 (F1748_11380) tsuB 2285769..2285996 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  F1748_RS11360 (F1748_11385) tsuA 2286010..2287068 (-) 1059 WP_000492340.1 thiosulfate utilization transporter TsuA/YeeE -
  F1748_RS11365 (F1748_11390) plaP 2287247..2288605 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  F1748_RS11370 (F1748_11395) yoeI 2288595..2288657 (-) 63 WP_010723108.1 membrane protein YoeI -
  F1748_RS11375 (F1748_11400) yeeY 2288872..2289801 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  F1748_RS11380 (F1748_11405) yeeZ 2289847..2290671 (-) 825 WP_000754758.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54458.73 Da        Isoelectric Point: 5.4700

>NTDB_id=338903 F1748_RS11350 WP_000980607.1 2284299..2285726(+) (sbcB) [Escherichia coli strain RM10740]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=338903 F1748_RS11350 WP_000980607.1 2284299..2285726(+) (sbcB) [Escherichia coli strain RM10740]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583

Multiple sequence alignment