Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   F1539_RS09930 Genome accession   NZ_CP043772
Coordinates   1956881..1957546 (-) Length   221 a.a.
NCBI ID   WP_013526173.1    Uniprot ID   Q4QLV5
Organism   Haemophilus influenzae biotype aegyptius strain HE24/F3037     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1951881..1962546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1539_RS09910 (F1539_09915) ddc 1952811..1954346 (-) 1536 WP_013526175.1 L-2,4-diaminobutyrate decarboxylase -
  F1539_RS09915 (F1539_09920) - 1954537..1955901 (-) 1365 WP_013526174.1 diaminobutyrate--2-oxoglutarate transaminase -
  F1539_RS09920 (F1539_09925) rpmG 1956249..1956419 (-) 171 WP_005613503.1 50S ribosomal protein L33 -
  F1539_RS09925 (F1539_09930) rpmB 1956431..1956667 (-) 237 WP_005542826.1 50S ribosomal protein L28 -
  F1539_RS09930 (F1539_09935) radC 1956881..1957546 (-) 666 WP_013526173.1 DNA repair protein RadC Machinery gene
  F1539_RS09935 (F1539_09940) coaBC 1957709..1958911 (+) 1203 WP_011272308.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  F1539_RS09940 (F1539_09945) dut 1958959..1959414 (+) 456 WP_005631431.1 dUTP diphosphatase -
  F1539_RS09945 (F1539_09950) slmA 1959418..1960074 (+) 657 WP_005648000.1 nucleoid occlusion factor SlmA -
  F1539_RS09950 (F1539_09955) - 1960096..1960347 (+) 252 WP_005647999.1 YheU family protein -
  F1539_RS09955 (F1539_09960) crp 1960332..1961006 (+) 675 WP_005647998.1 cAMP-activated global transcriptional regulator CRP Regulator
  F1539_RS09960 (F1539_09965) rumB 1961371..1961805 (-) 435 Protein_1918 23S rRNA (uracil(747)-C(5))-methyltransferase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25057.34 Da        Isoelectric Point: 6.3797

>NTDB_id=338731 F1539_RS09930 WP_013526173.1 1956881..1957546(-) (radC) [Haemophilus influenzae biotype aegyptius strain HE24/F3037]
MENNDELMPREKLLAFGAKALSDYELLAIFLRTGIKDCPVMSLSKNVLTHFGSLHALLSADKKAFCSVKGLGITQFIQLQ
AITEMTKRYLKQEMLSTPIINDLETVKLFLLTELQHEEREVFMVLFLDNQHRLIKKERLFLGTINVSAVYPREIIKEALY
CNAAALILAHNHPSGITEPSYSDQLITKKIQDAAELMEIRVLDHLIVGKSDCYSFAENCLL

Nucleotide


Download         Length: 666 bp        

>NTDB_id=338731 F1539_RS09930 WP_013526173.1 1956881..1957546(-) (radC) [Haemophilus influenzae biotype aegyptius strain HE24/F3037]
ATGGAAAACAATGATGAATTAATGCCACGGGAAAAATTGCTGGCATTCGGAGCAAAAGCATTAAGTGATTATGAACTACT
TGCGATTTTTTTACGTACTGGTATCAAAGATTGTCCTGTTATGTCACTTTCTAAAAATGTATTAACGCATTTTGGCTCCT
TGCACGCTTTACTTTCCGCAGATAAAAAAGCTTTCTGTTCTGTAAAAGGCTTAGGTATTACGCAATTTATTCAACTGCAA
GCGATTACGGAAATGACCAAGCGTTATTTAAAGCAAGAGATGTTAAGTACGCCGATTATTAATGATCTTGAAACGGTAAA
ACTTTTTTTACTCACTGAATTGCAACACGAGGAAAGAGAAGTATTTATGGTTTTATTTTTAGATAATCAACATCGTTTGA
TTAAAAAAGAGCGGTTATTTTTAGGTACAATTAATGTATCAGCGGTTTATCCGCGAGAAATTATTAAAGAAGCACTCTAT
TGTAATGCGGCAGCTTTAATTTTGGCACATAATCATCCTTCAGGTATAACGGAGCCGAGTTATTCGGATCAACTTATTAC
TAAAAAAATTCAAGATGCGGCTGAACTAATGGAAATTCGCGTGCTTGATCATTTAATTGTAGGGAAAAGCGATTGTTATT
CTTTCGCGGAGAATTGTTTATTATAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(102-218)

UPF0758 N-terminal (UPF0758_N)

(8-74)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QLV5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

97.738

100

0.977
  radC Streptococcus pneumoniae TIGR4

38.14

97.285

0.371
  radC Streptococcus pneumoniae R6

37.674

97.285

0.367
  radC Streptococcus pneumoniae D39

37.674

97.285

0.367