Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   F1539_RS06400 Genome accession   NZ_CP043772
Coordinates   1248054..1250135 (+) Length   693 a.a.
NCBI ID   WP_013526574.1    Uniprot ID   -
Organism   Haemophilus influenzae biotype aegyptius strain HE24/F3037     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1243054..1255135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1539_RS06380 (F1539_06385) gap 1243645..1244664 (-) 1020 WP_013525387.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  F1539_RS06385 (F1539_06390) gmk 1244915..1245541 (+) 627 WP_006995752.1 guanylate kinase -
  F1539_RS06390 (F1539_06395) rpoZ 1245604..1245870 (+) 267 WP_013526576.1 DNA-directed RNA polymerase subunit omega -
  F1539_RS06395 (F1539_06400) spoT 1245943..1248057 (+) 2115 WP_013526575.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  F1539_RS06400 (F1539_06405) recG 1248054..1250135 (+) 2082 WP_013526574.1 ATP-dependent DNA helicase RecG Machinery gene
  F1539_RS06405 (F1539_06410) murI 1250165..1250974 (+) 810 WP_013526573.1 glutamate racemase -
  F1539_RS06410 (F1539_06415) lldD 1251186..1252331 (+) 1146 WP_005649913.1 FMN-dependent L-lactate dehydrogenase LldD -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 78125.71 Da        Isoelectric Point: 8.8725

>NTDB_id=338702 F1539_RS06400 WP_013526574.1 1248054..1250135(+) (recG) [Haemophilus influenzae biotype aegyptius strain HE24/F3037]
MSLELLDAVPLTSLSGVGAAISNKLAKIGIHNLQDLLFHLPIRYEDRTRITPIANLRPEQYFTIEGIVQTCEVAFGRRPI
LSVSLSDGTSKIMLRFFNFNAGMRNSFQVGVRVKAFGEVKRGRYMPEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQ
NSLRKLTDQALALLDKVQIAEILPNEFNPHQYSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQKVR
LGTQQFSALPLHYQTDLKQRFLATLLFQPTNAQKRVVSDIEQDLIKDYPMMRLVQGDVGSGKTLVAALAALTAIDNGKQV
ALMAPTEILAEQHANNFRRWFEPFGIEVGWLAGKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQH
RFGVHQRLMLRKKGEKAGFYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRTEIVMRVKNACV
NEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMRFKNAELDLLVATTVIEVGVDVP
NASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMYKPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQ
TGIAELRVANLMRDRKMIPTVQHYAKSLIQKYPDVAESLIRRWLNNKEIYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=338702 F1539_RS06400 WP_013526574.1 1248054..1250135(+) (recG) [Haemophilus influenzae biotype aegyptius strain HE24/F3037]
ATGAGCCTTGAACTTCTCGATGCCGTGCCTTTGACCAGCCTCTCTGGTGTGGGGGCTGCCATTTCTAATAAACTGGCTAA
AATCGGCATTCATAACTTGCAAGATTTACTCTTTCATTTACCTATTCGCTATGAAGATCGTACGCGAATTACGCCAATCG
CTAATCTTCGCCCTGAACAATATTTTACTATAGAGGGAATTGTACAAACCTGTGAAGTCGCTTTTGGCCGTCGCCCGATT
TTATCGGTAAGTTTGTCAGACGGCACATCGAAAATTATGTTACGTTTTTTCAATTTTAATGCGGGGATGCGTAATAGTTT
TCAAGTTGGCGTGCGAGTAAAGGCCTTTGGAGAGGTAAAACGTGGGCGTTACATGCCAGAAATTCATCATCCAGAATATC
AAATTGTGCGAGATAATGCGCCCATAGTATTGGAAGAAACCCTAACGCCGATTTATTCCACAACGGAAGGGCTAAAACAA
AATTCATTACGAAAATTAACGGATCAAGCTTTGGCATTGCTCGACAAAGTTCAGATTGCAGAAATTTTGCCTAATGAATT
TAATCCACATCAATATAGCTTAAAAGAGGCATTGCGATTATTGCATCGTCCGCCGCCAGATATTTCATTAGAAATGTTAG
AGCAAGGTAAGCATCCTGCACAACAACGATTAATTTTTGAAGAGCTTCTGGCACATAATTTAGCTATGCAAAAAGTGCGG
TTAGGAACGCAACAATTTTCTGCCTTACCGCTACATTATCAAACAGATTTGAAACAGCGATTTTTAGCCACCTTGCTATT
TCAACCCACTAATGCTCAAAAGCGAGTAGTGTCCGATATTGAACAAGATCTTATCAAAGATTATCCGATGATGCGCTTAG
TGCAAGGGGATGTAGGATCGGGAAAAACATTGGTTGCCGCATTGGCTGCTTTAACTGCAATTGATAATGGCAAACAAGTC
GCCTTAATGGCGCCAACAGAAATTCTTGCAGAGCAGCATGCGAATAATTTTAGACGGTGGTTTGAGCCTTTCGGTATTGA
AGTTGGCTGGTTGGCAGGTAAAGTAAAAGGAAAATCAAGACAAGCAGAGCTTGAAAAAATCAAAACTGGTGCGGTGCAAA
TGGTGGTGGGGACGCATGCTTTATTCCAAGAAGAAGTCGAGTTTTCCGACTTAGCATTAGTGATTATTGATGAACAACAT
CGTTTTGGGGTGCATCAACGATTAATGTTGCGTAAAAAAGGCGAAAAAGCAGGATTTTATCCCCATCAGTTAATTATGAC
GGCAACACCGATTCCAAGAACGTTGGCAATGACCGTCTATGCAGATTTGGATACATCAATTATTGATGAATTGCCTCCAG
GCCGTACGCCGATAACAACCGTAGTGGTTTCTGAAGAACGTCGCACTGAAATTGTGATGCGTGTAAAAAACGCTTGTGTT
AATGAAAAACGTCAAGCCTATTGGGTGTGTACGTTAATTGATGAATCAGAGGTGTTAGAAGCTCAAGCAGCTGAAGCGAT
TTGGGAAGATTTAACGAAAGCGTTACCGATGTTAAATATTGGTTTAGTGCACGGGCGCATGAAACCCCAAGAAAAACAAG
ATGTCATGATGCGTTTTAAAAATGCAGAATTGGATTTATTGGTGGCGACGACAGTTATCGAAGTGGGGGTTGATGTTCCG
AATGCAAGTTTGATGATTATCGAAAATGCAGAACGTTTAGGTTTATCGCAGCTTCATCAGTTACGAGGGCGCGTTGGTCG
AGGCAGCACGGCTTCTTTTTGTGTACTAATGTATAAACCTCCGCTCGGCAAAGTTTCGCAAAAACGTTTGCAAGTGCTAC
GAGATAGCCAAGATGGGTTTGTTATTTCGGAAAAAGATTTAGAAATTCGTGGGCCAGGTGAAGTACTTGGAACGAAACAA
ACGGGAATTGCTGAATTGCGAGTAGCAAATTTAATGCGAGATAGAAAAATGATACCAACGGTGCAACATTATGCGAAATC
ACTTATCCAAAAATACCCTGATGTGGCAGAAAGCCTAATCCGTCGCTGGCTCAATAATAAAGAAATCTACTCGAACGCTT
AA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(273-405)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-677)

Helicase conserved C-terminal domain (Helicase_C)

(480-588)

RecG wedge domain (RecG_wedge)

(15-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.63

97.403

0.483
  recG Bacillus subtilis subsp. subtilis str. 168

38.955

96.681

0.377
  recG/mmsA Streptococcus pneumoniae R6

39.269

94.805

0.372
  recG/mmsA Streptococcus pneumoniae R36A

39.269

94.805

0.372