Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   F1537_RS05770 Genome accession   NZ_CP043770
Coordinates   1111471..1113552 (+) Length   693 a.a.
NCBI ID   WP_013526574.1    Uniprot ID   -
Organism   Haemophilus influenzae biotype aegyptius strain HE7/F1946     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1106471..1118552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1537_RS05750 (F1537_05760) gap 1107062..1108081 (-) 1020 WP_013525387.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  F1537_RS05755 (F1537_05765) gmk 1108332..1108958 (+) 627 WP_006995752.1 guanylate kinase -
  F1537_RS05760 (F1537_05770) rpoZ 1109021..1109287 (+) 267 WP_013526576.1 DNA-directed RNA polymerase subunit omega -
  F1537_RS05765 (F1537_05775) spoT 1109360..1111474 (+) 2115 WP_013526575.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  F1537_RS05770 (F1537_05780) recG 1111471..1113552 (+) 2082 WP_013526574.1 ATP-dependent DNA helicase RecG Machinery gene
  F1537_RS05775 (F1537_05785) murI 1113582..1114391 (+) 810 WP_013526573.1 glutamate racemase -
  F1537_RS05780 (F1537_05790) lldD 1114603..1115748 (+) 1146 WP_005649913.1 FMN-dependent L-lactate dehydrogenase LldD -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 78125.71 Da        Isoelectric Point: 8.8725

>NTDB_id=338577 F1537_RS05770 WP_013526574.1 1111471..1113552(+) (recG) [Haemophilus influenzae biotype aegyptius strain HE7/F1946]
MSLELLDAVPLTSLSGVGAAISNKLAKIGIHNLQDLLFHLPIRYEDRTRITPIANLRPEQYFTIEGIVQTCEVAFGRRPI
LSVSLSDGTSKIMLRFFNFNAGMRNSFQVGVRVKAFGEVKRGRYMPEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQ
NSLRKLTDQALALLDKVQIAEILPNEFNPHQYSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQKVR
LGTQQFSALPLHYQTDLKQRFLATLLFQPTNAQKRVVSDIEQDLIKDYPMMRLVQGDVGSGKTLVAALAALTAIDNGKQV
ALMAPTEILAEQHANNFRRWFEPFGIEVGWLAGKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQH
RFGVHQRLMLRKKGEKAGFYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRTEIVMRVKNACV
NEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMRFKNAELDLLVATTVIEVGVDVP
NASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMYKPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQ
TGIAELRVANLMRDRKMIPTVQHYAKSLIQKYPDVAESLIRRWLNNKEIYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=338577 F1537_RS05770 WP_013526574.1 1111471..1113552(+) (recG) [Haemophilus influenzae biotype aegyptius strain HE7/F1946]
ATGAGCCTTGAACTTCTCGATGCCGTGCCTTTGACCAGCCTCTCTGGTGTGGGGGCTGCCATTTCTAATAAACTGGCTAA
AATCGGCATTCATAACTTGCAAGATTTACTCTTTCATTTACCTATTCGCTATGAAGATCGTACGCGAATTACGCCAATCG
CTAATCTTCGCCCTGAACAATATTTTACTATAGAGGGAATTGTACAAACCTGTGAAGTCGCTTTTGGCCGTCGCCCGATT
TTATCGGTAAGTTTGTCAGACGGCACATCGAAAATTATGTTACGTTTTTTCAATTTTAATGCGGGGATGCGTAATAGTTT
TCAAGTTGGCGTGCGAGTAAAGGCCTTTGGAGAGGTAAAACGTGGGCGTTACATGCCAGAAATTCATCATCCAGAATATC
AAATTGTGCGAGATAATGCGCCCATAGTATTGGAAGAAACCCTAACGCCGATTTATTCCACAACGGAAGGGCTAAAACAA
AATTCATTACGAAAATTAACGGATCAAGCTTTGGCATTGCTCGACAAAGTTCAGATTGCAGAAATTTTGCCTAATGAATT
TAATCCACATCAATATAGCTTAAAAGAGGCATTGCGATTATTGCATCGTCCGCCGCCAGATATTTCATTAGAAATGTTAG
AGCAAGGTAAGCATCCTGCACAACAACGATTAATTTTTGAAGAGCTTCTGGCACATAATTTAGCTATGCAAAAAGTGCGG
TTAGGAACGCAACAATTTTCTGCCTTACCGCTACATTATCAAACAGATTTGAAACAGCGATTTTTAGCCACCTTGCTATT
TCAACCCACTAATGCTCAAAAGCGAGTAGTGTCCGATATTGAACAAGATCTTATCAAAGATTATCCGATGATGCGCTTAG
TGCAAGGGGATGTAGGATCGGGAAAAACATTGGTTGCCGCATTGGCTGCTTTAACTGCAATTGATAATGGCAAACAAGTC
GCCTTAATGGCGCCAACAGAAATTCTTGCAGAGCAGCATGCGAATAATTTTAGACGGTGGTTTGAGCCTTTCGGTATTGA
AGTTGGCTGGTTGGCAGGTAAAGTAAAAGGAAAATCAAGACAAGCAGAGCTTGAAAAAATCAAAACTGGTGCGGTGCAAA
TGGTGGTGGGGACGCATGCTTTATTCCAAGAAGAAGTCGAGTTTTCCGACTTAGCATTAGTGATTATTGATGAACAACAT
CGTTTTGGGGTGCATCAACGATTAATGTTGCGTAAAAAAGGCGAAAAAGCAGGATTTTATCCCCATCAGTTAATTATGAC
GGCAACACCGATTCCAAGAACGTTGGCAATGACCGTCTATGCAGATTTGGATACATCAATTATTGATGAATTGCCTCCAG
GCCGTACGCCGATAACAACCGTAGTGGTTTCTGAAGAACGTCGCACTGAAATTGTGATGCGTGTAAAAAACGCTTGTGTT
AATGAAAAACGTCAAGCCTATTGGGTGTGTACGTTAATTGATGAATCAGAGGTGTTAGAAGCTCAAGCAGCTGAAGCGAT
TTGGGAAGATTTAACGAAAGCGTTACCGATGTTAAATATTGGTTTAGTGCACGGGCGCATGAAACCCCAAGAAAAACAAG
ATGTCATGATGCGTTTTAAAAATGCAGAATTGGATTTATTGGTGGCGACGACAGTTATCGAAGTGGGGGTTGATGTTCCG
AATGCAAGTTTGATGATTATCGAAAATGCAGAACGTTTAGGTTTATCGCAGCTTCATCAGTTACGAGGGCGCGTTGGTCG
AGGCAGCACGGCTTCTTTTTGTGTACTAATGTATAAACCTCCGCTCGGCAAAGTTTCGCAAAAACGTTTGCAAGTGCTAC
GAGATAGCCAAGATGGGTTTGTTATTTCGGAAAAAGATTTAGAAATTCGTGGGCCAGGTGAAGTACTTGGAACGAAACAA
ACGGGAATTGCTGAATTGCGAGTAGCAAATTTAATGCGAGATAGAAAAATGATACCAACGGTGCAACATTATGCGAAATC
ACTTATCCAAAAATACCCTGATGTGGCAGAAAGCCTAATCCGTCGCTGGCTCAATAATAAAGAAATCTACTCGAACGCTT
AA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(273-405)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-677)

Helicase conserved C-terminal domain (Helicase_C)

(480-588)

RecG wedge domain (RecG_wedge)

(15-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.63

97.403

0.483
  recG Bacillus subtilis subsp. subtilis str. 168

38.955

96.681

0.377
  recG/mmsA Streptococcus pneumoniae R6

39.269

94.805

0.372
  recG/mmsA Streptococcus pneumoniae R36A

39.269

94.805

0.372

Multiple sequence alignment