Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   EQH17_RS09510 Genome accession   NZ_CP035263
Coordinates   1895853..1896806 (-) Length   317 a.a.
NCBI ID   WP_000345084.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901922     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1890853..1901806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH17_RS09485 (EQH17_10045) - 1891615..1892238 (-) 624 WP_000932661.1 hypothetical protein -
  EQH17_RS09490 (EQH17_10050) jag 1892289..1893275 (-) 987 WP_000260025.1 RNA-binding cell elongation regulator Jag/EloR -
  EQH17_RS09495 (EQH17_10055) - 1893294..1894118 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  EQH17_RS09500 (EQH17_10060) rnpA 1894093..1894464 (-) 372 WP_000739246.1 ribonuclease P protein component -
  EQH17_RS09505 (EQH17_10065) - 1894612..1895802 (-) 1191 WP_000167755.1 acetate kinase -
  EQH17_RS09510 (EQH17_10070) comYH 1895853..1896806 (-) 954 WP_000345084.1 class I SAM-dependent methyltransferase Machinery gene
  EQH17_RS09515 (EQH17_10075) - 1896867..1897454 (-) 588 Protein_1872 class I SAM-dependent methyltransferase -
  EQH17_RS09520 (EQH17_10080) comGG/cglG 1897591..1898004 (-) 414 WP_000265617.1 competence type IV pilus minor pilin ComGG Machinery gene
  EQH17_RS09525 (EQH17_10085) comGF/cglF 1897982..1898443 (-) 462 WP_000250529.1 competence type IV pilus minor pilin ComGF Machinery gene
  EQH17_RS09530 (EQH17_10090) comGE/cglE 1898406..1898708 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  EQH17_RS09535 (EQH17_10095) comGD/cglD 1898671..1899075 (-) 405 WP_000588002.1 competence type IV pilus minor pilin ComGD Machinery gene
  EQH17_RS09540 (EQH17_10100) comGC/cglC 1899068..1899334 (-) 267 WP_000962026.1 competence type IV pilus major pilin ComGC Machinery gene
  EQH17_RS09545 (EQH17_10105) - 1899336..1899593 (-) 258 WP_000698511.1 hypothetical protein -
  EQH17_RS09550 (EQH17_10110) lytA 1899825..1900781 (-) 957 WP_061632303.1 N-acetylmuramoyl-L-alanine amidase LytA -
  EQH17_RS09555 (EQH17_10115) - 1900785..1901117 (-) 333 WP_061632304.1 phage holin -
  EQH17_RS09560 (EQH17_10120) - 1901121..1901537 (-) 417 WP_001165341.1 phage holin family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35646.83 Da        Isoelectric Point: 4.2270

>NTDB_id=338567 EQH17_RS09510 WP_000345084.1 1895853..1896806(-) (comYH) [Streptococcus pneumoniae strain TVO_1901922]
MDFEKIEQAYIYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELNQVKDNNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFTEEEITILEMGSGMGILGATFLTSLDKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGFKYLKSDGYAIFLAPSDLLTGPQ
SDLLKVWLKEEASLVAMISLPENLFANAKQSKTIFILQKKSEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=338567 EQH17_RS09510 WP_000345084.1 1895853..1896806(-) (comYH) [Streptococcus pneumoniae strain TVO_1901922]
ATGGATTTTGAAAAAATTGAACAAGCTTATATCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAATAGCATCTATCTGGATGGTGAAACTGAGCTAAACCAGGTCAAAGACAACAATC
AGGCCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACGCCAGATGCTATTGCCTTACTTTTGGTATTTATTGTGGAAGAGTTGTTTAC
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTCTAGGCGCTACTTTCTTGACCTCGCTTGATAAAA
AGGTGGATTACTTGGGAATGGAAGTGGATGATTTGCTGATTGATCTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGCCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGTGACTTGCCTGTTGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGCCAAGAACATACTTACGCTCATCACTTGCTCA
TGGAACAAGGGTTTAAGTACCTTAAGTCAGATGGATATGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCGGTCCTCAA
AGTGATTTGTTGAAAGTCTGGTTGAAAGAGGAGGCAAGTCTGGTTGCTATGATTAGTTTACCTGAAAATCTCTTTGCTAA
TGCTAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAGTGAAATAGCAGTGGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.313

98.738

0.536
  comYH Streptococcus mutans UA159

53.994

98.738

0.533

Multiple sequence alignment