Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FZN58_RS03175 Genome accession   NZ_CP043763
Coordinates   601936..602709 (+) Length   257 a.a.
NCBI ID   WP_002868431.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BfR-CA-14430     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 596936..607709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FZN58_RS03160 (FZN58_03160) - 597785..599719 (-) 1935 WP_010891871.1 ribonuclease R family protein -
  FZN58_RS03165 (FZN58_03165) ilvC 599838..600860 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  FZN58_RS03170 (FZN58_03170) - 600864..601946 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  FZN58_RS03175 (FZN58_03175) dprA 601936..602709 (+) 774 WP_002868431.1 DNA-processing protein DprA Machinery gene
  FZN58_RS03180 (FZN58_03180) dprB 602706..603089 (+) 384 WP_002858579.1 Holliday junction resolvase RuvX Machinery gene
  FZN58_RS03185 (FZN58_03185) - 603118..603957 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  FZN58_RS03190 (FZN58_03190) msrA 604133..604630 (-) 498 WP_002890709.1 peptide-methionine (S)-S-oxide reductase MsrA -
  FZN58_RS03195 (FZN58_03195) ppa 604671..605189 (-) 519 WP_032584152.1 inorganic diphosphatase -
  FZN58_RS03200 (FZN58_03200) adk 605199..605777 (-) 579 WP_002859580.1 adenylate kinase -
  FZN58_RS03205 (FZN58_03205) aspS 605774..607525 (-) 1752 WP_032584150.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28848.66 Da        Isoelectric Point: 7.0853

>NTDB_id=338511 FZN58_RS03175 WP_002868431.1 601936..602709(+) (dprA) [Campylobacter jejuni strain BfR-CA-14430]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=338511 FZN58_RS03175 WP_002868431.1 601936..602709(+) (dprA) [Campylobacter jejuni strain BfR-CA-14430]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.444

100

0.984
  dprA Helicobacter pylori 26695

49.167

93.385

0.459

Multiple sequence alignment