Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   F1D59_RS26480 Genome accession   NZ_CP043638
Coordinates   5907172..5909328 (+) Length   718 a.a.
NCBI ID   WP_053612085.1    Uniprot ID   A0ABQ3NIL6
Organism   Streptomyces sp. INR7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5902172..5914328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1D59_RS26455 (F1D59_26565) - 5902680..5903468 (+) 789 WP_185558719.1 class I SAM-dependent methyltransferase -
  F1D59_RS26460 (F1D59_26570) - 5903535..5903915 (+) 381 WP_030660020.1 cupin domain-containing protein -
  F1D59_RS26465 (F1D59_26575) - 5903905..5905122 (-) 1218 WP_106981608.1 MFS transporter -
  F1D59_RS26470 (F1D59_26580) - 5905436..5905999 (-) 564 WP_053612086.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  F1D59_RS26475 (F1D59_26585) - 5906035..5906937 (-) 903 WP_030660014.1 glycerophosphodiester phosphodiesterase family protein -
  F1D59_RS26480 (F1D59_26590) uvrB 5907172..5909328 (+) 2157 WP_053612085.1 excinuclease ABC subunit UvrB Machinery gene
  F1D59_RS26485 (F1D59_26595) - 5909417..5909995 (+) 579 WP_030660011.1 TerD family protein -
  F1D59_RS26490 (F1D59_26600) - 5910039..5911997 (+) 1959 WP_185558722.1 TerD family protein -
  F1D59_RS26495 (F1D59_26605) - 5912238..5913221 (+) 984 WP_030660006.1 TerC family protein -

Sequence

Protein


Download         Length: 718 a.a.        Molecular weight: 80471.59 Da        Isoelectric Point: 4.9356

>NTDB_id=338484 F1D59_RS26480 WP_053612085.1 5907172..5909328(+) (uvrB) [Streptomyces sp. INR7]
MRPVSKIERTVAPFEVVSPYQPSGDQPAAIAELEKRIRAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTP
QEYVDRMVALKVGEEIDRDQLLRRFVDIQYTRNDVAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EVISEDRELYVFPASHYVAGPERMEKAIAGIEAELAERLTELEKQGKMLEAQRLRMRTTYDLEMMRQIGSCSGIENYSLH
MDDRERGSAPNTLIDYFPEDFLLVIDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQTVYL
SATPGKYELSRGDGFVEQIIRPTGLIDPEVVVKPTEGQIDDLVHEIRKRVEKDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRIELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKVTPGMEKAIEETNRRREKQIAYNTANGIDPQPLRKKINDIVATIAREELDTEQLLGTGYRQGKEGKGAKAPVPALAA
HAPAGAKGGKGTKPAKGAKGAEVLTDRPAAELASLIEQMTERMRAAAAELQFEVAARIRDEVGELKKELRQMKEAGLA

Nucleotide


Download         Length: 2157 bp        

>NTDB_id=338484 F1D59_RS26480 WP_053612085.1 5907172..5909328(+) (uvrB) [Streptomyces sp. INR7]
ATGCGGCCCGTATCGAAGATCGAACGCACGGTGGCGCCTTTCGAGGTCGTCAGCCCCTACCAGCCCAGCGGCGACCAGCC
GGCGGCCATCGCCGAGCTGGAGAAGCGCATCCGTGCAGGTGAGAAGGATGTCGTCCTGCTGGGCGCCACCGGCACCGGCA
AGTCGGCGACCACCGCCTGGATGATCGAGAAGCTCCAGCGCCCCACCCTGGTCATGGCGCCGAACAAGACGCTGGCCGCC
CAGCTGGCGAACGAGTTCCGCGAGCTCCTGCCGAACAACGCCGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCCTACGTACCGCAGTCGGACACGTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTGGAGCGGCTGCGCCACT
CCGCCACCAATTCGCTGCTGACCCGACGGGACGTCATCGTCGTCGCCTCCGTGTCCTGCATCTACGGCCTCGGCACCCCG
CAGGAGTACGTCGACCGGATGGTCGCGCTCAAGGTGGGGGAGGAGATCGACCGGGACCAGCTGCTGCGCCGCTTCGTCGA
CATCCAGTACACGCGCAACGACGTCGCCTTCACCCGCGGCACCTTCCGGGTCCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAACTGGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCCCTCTCCACCCTGCACCCGCTGACCGGC
GAGGTCATCAGCGAGGACCGCGAGCTCTACGTCTTCCCCGCCAGCCACTACGTCGCCGGCCCGGAACGCATGGAGAAGGC
GATCGCCGGCATCGAGGCCGAGCTGGCCGAGCGCCTCACCGAGCTGGAGAAGCAGGGCAAGATGCTGGAGGCGCAGCGCC
TGCGCATGCGCACCACCTACGACCTGGAGATGATGCGCCAGATCGGGTCCTGCTCCGGCATCGAGAACTACTCGCTGCAC
ATGGACGACCGCGAGCGGGGATCGGCGCCCAACACCCTCATCGACTACTTCCCGGAGGACTTCCTCCTGGTCATCGACGA
GTCGCACGTCACCGTGCCGCAGATCGGCGCCATGTACGAGGGCGACGCCTCCCGCAAGCGGACCCTGGTCGACCACGGCT
TCCGGCTGCCGTCCGCGCTGGACAACCGCCCGCTGAAGTGGGAGGAGTTCCAGGAGCGCATCGGCCAGACCGTCTACCTG
TCGGCGACCCCCGGAAAGTACGAGCTCTCCCGCGGCGACGGCTTCGTCGAGCAGATCATCCGCCCCACCGGCCTCATCGA
CCCCGAGGTCGTGGTCAAGCCCACCGAGGGGCAGATCGACGACCTGGTGCACGAGATCCGCAAGCGGGTCGAGAAGGACG
AGCGGGTCCTGGTCACCACCCTCACCAAGAAGATGGCCGAGGACCTCACGGACTACTTCCTGGAGCTCGGCATCCAGGTC
CGCTATCTGCACAGCGACGTCGACACCCTGCGCCGCATCGAGCTGCTGCGCGAGCTGCGGGCCGGTGAGTACGACGTCCT
GGTCGGCATCAACCTGCTCCGCGAGGGCCTCGACCTGCCCGAGGTGTCCCTGGTGGCGATCCTCGACGCCGACAAGGAGG
GCTTCCTGCGCTCGGGCACCTCCCTGATCCAGACCATCGGCCGCGCCGCGCGCAACGTCTCCGGCCAGGTCCACATGTAC
GCGGACAAGGTCACGCCGGGCATGGAGAAGGCCATCGAGGAGACCAACCGGCGCCGCGAGAAGCAAATCGCCTACAACAC
GGCGAACGGGATCGACCCGCAGCCGCTCCGCAAGAAGATCAACGACATCGTCGCCACCATCGCCCGCGAGGAACTGGACA
CCGAGCAGCTCCTCGGCACCGGCTACCGGCAGGGCAAGGAGGGCAAGGGCGCCAAGGCACCGGTGCCGGCGCTCGCGGCC
CACGCCCCGGCGGGCGCCAAGGGCGGCAAGGGCACGAAACCGGCCAAGGGAGCCAAGGGCGCCGAGGTGCTCACCGACCG
GCCGGCCGCCGAACTCGCCTCGCTCATCGAGCAGATGACCGAACGCATGCGCGCCGCCGCCGCGGAGCTCCAGTTCGAGG
TCGCGGCCCGGATCCGGGACGAGGTCGGCGAGCTGAAGAAGGAGCTCCGGCAGATGAAGGAAGCGGGCCTCGCCTGA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-145)

UvrB/uvrC motif (UVR)

(674-708)

Helicase conserved C-terminal domain (Helicase_C)

(441-551)

UvrB interaction domain (UvrB_inter)

(169-257)

Ultra-violet resistance protein B (UvrB)

(559-600)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.815

97.075

0.552
  uvrB Streptococcus pneumoniae R6

56.815

97.075

0.552
  uvrB Streptococcus pneumoniae D39

56.815

97.075

0.552

Multiple sequence alignment