Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   F1D59_RS23920 Genome accession   NZ_CP043638
Coordinates   5360789..5361841 (+) Length   350 a.a.
NCBI ID   WP_030657144.1    Uniprot ID   A0ABQ3P045
Organism   Streptomyces sp. INR7     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5355789..5366841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1D59_RS23900 (F1D59_23990) - 5356511..5356885 (+) 375 WP_258054054.1 hypothetical protein -
  F1D59_RS23905 (F1D59_23995) - 5356954..5359035 (+) 2082 WP_053625638.1 molybdopterin oxidoreductase family protein -
  F1D59_RS23910 (F1D59_24000) - 5359032..5359988 (-) 957 WP_258054055.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  F1D59_RS23915 (F1D59_24005) - 5360029..5360637 (-) 609 WP_030657146.1 hypothetical protein -
  F1D59_RS23920 (F1D59_24010) rpoS 5360789..5361841 (+) 1053 WP_030657144.1 RNA polymerase sigma factor Regulator
  F1D59_RS23925 (F1D59_24015) - 5361913..5362431 (-) 519 WP_053628273.1 GNAT family N-acetyltransferase -
  F1D59_RS23930 (F1D59_24020) rcrQ 5362682..5364604 (-) 1923 WP_030657140.1 ABC transporter ATP-binding protein Regulator
  F1D59_RS23935 (F1D59_24025) rcrP 5364601..5366334 (-) 1734 WP_030657138.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 39409.99 Da        Isoelectric Point: 5.2649

>NTDB_id=338480 F1D59_RS23920 WP_030657144.1 5360789..5361841(+) (rpoS) [Streptomyces sp. INR7]
MQTRTLTVNASESSEAKAVDEEPEVLELIEPVPVQRRRDSGENGGGAGPSADLFRQYLREIGRIPLLTAAEEVDLARRVE
AGLFAEEKLGTTPDLDSQLALDLDRLVVMGRMAKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYA
RGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTAEEVAVHLELTPERVLEVLRLAQ
EPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFFLLREHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGV
TRERIRQIESKTLNKLRDHAFADQLRGYLD

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=338480 F1D59_RS23920 WP_030657144.1 5360789..5361841(+) (rpoS) [Streptomyces sp. INR7]
GTGCAGACCCGGACCCTGACCGTGAACGCGAGCGAGTCCTCGGAGGCCAAAGCCGTGGACGAAGAGCCCGAGGTACTGGA
GCTGATCGAGCCGGTGCCCGTGCAGCGCAGGCGGGACAGCGGCGAGAACGGGGGCGGAGCGGGACCCTCCGCCGACCTGT
TCCGCCAGTACCTGCGCGAGATAGGCAGGATCCCGCTGCTCACCGCCGCGGAGGAGGTGGATCTGGCACGGCGCGTCGAA
GCCGGGCTGTTCGCCGAGGAGAAACTCGGCACCACCCCGGACCTCGACTCCCAGCTCGCCCTCGACCTCGACCGGCTCGT
CGTCATGGGACGCATGGCCAAACGCCGTCTCATCGAGTCGAACCTGCGCCTGGTCGTCTCCGTCGCGAAGCGGTACGTGG
GCCGCGGGCTCACCATGCTCGACCTGGTCCAGGAGGGGAACCTCGGGCTGATCCGGGCCGTTGAGAAGTTCGACTACGCC
CGCGGGTACAAGTTCTCCACCTACGCCACCTGGTGGATCAGGCAGGCTATGTCCCGGGCACTCGCCGACCAGGCCCGGAC
CATCCGCGTGCCCGTCCACGTCGTCGAGCTGATCAACCGCGTCGTGCGCGTACAGCGCCGCATGCTCCAGGAACGCGGCT
ACGAGCCCACCGCCGAAGAGGTCGCCGTCCACCTGGAGCTGACCCCCGAGCGCGTCCTGGAAGTGCTGCGCCTCGCCCAG
GAGCCGGTCTCCCTGCACGCACCCGTCGGCGAGGAGGACGACGTCGCGCTCGGCGACCTCATCGAGGACGGGGACGCCGC
CTCGCCCGTGGAGTCGGCCGCCTTCTTCCTGCTGCGCGAGCACCTGGAAGCGGTCCTGTCGACCCTCGGCGAACGCGAGC
GCAAAGTCGTGCAGTTGCGGTACGGGCTCGCGGACGGACGCCCCCGCACCCTGGAGGAGATCGGCCGGATCTTCGGCGTG
ACGCGCGAGCGGATCCGCCAGATCGAGTCCAAGACCCTCAACAAGCTGCGCGACCACGCCTTCGCCGACCAGCTGCGCGG
CTACCTCGACTGA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(285-337)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(52-85)

Sigma-70 region 3 (Sigma70_r3)

(196-272)

Sigma-70 region 2 (Sigma70_r2)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

43.667

85.714

0.374

Multiple sequence alignment