Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   F1D59_RS23930 Genome accession   NZ_CP043638
Coordinates   5362682..5364604 (-) Length   640 a.a.
NCBI ID   WP_030657140.1    Uniprot ID   -
Organism   Streptomyces sp. INR7     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5357682..5369604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1D59_RS23910 (F1D59_24000) - 5359032..5359988 (-) 957 WP_258054055.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  F1D59_RS23915 (F1D59_24005) - 5360029..5360637 (-) 609 WP_030657146.1 hypothetical protein -
  F1D59_RS23920 (F1D59_24010) rpoS 5360789..5361841 (+) 1053 WP_030657144.1 RNA polymerase sigma factor Regulator
  F1D59_RS23925 (F1D59_24015) - 5361913..5362431 (-) 519 WP_053628273.1 GNAT family N-acetyltransferase -
  F1D59_RS23930 (F1D59_24020) rcrQ 5362682..5364604 (-) 1923 WP_030657140.1 ABC transporter ATP-binding protein Regulator
  F1D59_RS23935 (F1D59_24025) rcrP 5364601..5366334 (-) 1734 WP_030657138.1 ABC transporter ATP-binding protein Regulator
  F1D59_RS23940 (F1D59_24030) - 5366495..5367943 (-) 1449 WP_030657136.1 FGGY family carbohydrate kinase -
  F1D59_RS23945 (F1D59_24035) - 5368040..5368345 (-) 306 WP_030657134.1 hypothetical protein -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 68946.35 Da        Isoelectric Point: 5.1914

>NTDB_id=338481 F1D59_RS23930 WP_030657140.1 5362682..5364604(-) (rcrQ) [Streptomyces sp. INR7]
MSGPGGRMMMGPAQRSLDFKGSGKRLLGQLAQDRAKLWGMVLAVVGSVACAVVGPKILGEATDLVFAGIVGREMPAGVTK
QQALDGMRARGDEGMADMLSGTDFTPGQGIDFGAVGVVAIWALVVFTLAGLLMLVATRLSNHVMNGTLYRMREELQAKLS
RLPLSYFDQQKRGEVLSRATNDIDNIGQTLQQTMGQLLNSLLTIVGVLAMMFWISPLLALVAVGTVPVSVYVAAKIGKKS
QPQFVEQWKTTGTLNAHIEEMYSGHNLVKVFGRQKESAAVFAEQNEALYRASFKAQLVSGIMQPVMFFISNINYVLIAVV
GGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVYELLDAPEQERDADVPERPQELRGQVTFDKV
AFRYEPDRPLIENLSLSVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGEIALDGVDIAKMTREELRGGIGMVLQDTWL
FGGTIAQNIAYGASREVTRAEIEEAARAAHADRFIRTLPDGYDTVLDDEGAGVSAGEKQLITIARAFLSDPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADLILVMESGSIVEQGTHEELLASGGAYARLYAAQFAQAVAEVD

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=338481 F1D59_RS23930 WP_030657140.1 5362682..5364604(-) (rcrQ) [Streptomyces sp. INR7]
ATGAGCGGGCCCGGAGGACGGATGATGATGGGGCCGGCCCAGCGGTCCCTGGACTTCAAGGGATCGGGCAAGCGGCTCCT
GGGCCAGCTCGCGCAGGACCGGGCCAAGCTGTGGGGCATGGTCCTCGCCGTCGTCGGCAGTGTCGCCTGCGCCGTCGTCG
GACCGAAGATCCTCGGCGAGGCGACCGACCTGGTCTTCGCGGGAATCGTCGGCCGGGAGATGCCGGCCGGTGTGACCAAG
CAGCAGGCGCTGGACGGGATGCGCGCCCGCGGTGACGAGGGCATGGCGGACATGCTGTCCGGCACCGACTTCACCCCGGG
CCAGGGCATCGACTTCGGCGCGGTCGGGGTCGTGGCGATCTGGGCGCTGGTGGTCTTCACCCTGGCCGGCCTGCTGATGC
TGGTCGCGACGCGGCTGTCGAACCACGTCATGAACGGCACCCTGTACCGGATGCGCGAGGAGCTCCAGGCGAAGCTGTCG
CGGCTGCCGCTGTCGTACTTCGACCAGCAGAAGCGCGGCGAGGTGCTGAGCCGGGCCACCAACGACATAGACAACATCGG
CCAGACGCTCCAGCAGACGATGGGTCAGCTGCTGAACTCGCTGCTGACGATCGTCGGCGTGCTCGCGATGATGTTCTGGA
TCTCGCCGCTGCTGGCGCTGGTCGCGGTGGGGACGGTACCGGTCTCGGTCTACGTCGCCGCGAAGATCGGCAAGAAGTCG
CAGCCGCAGTTCGTGGAGCAGTGGAAGACGACCGGCACGCTCAACGCCCACATCGAGGAGATGTACTCGGGGCACAACCT
GGTCAAGGTCTTCGGCCGGCAGAAGGAGTCCGCGGCGGTCTTCGCCGAGCAGAACGAGGCGCTGTACCGGGCCTCGTTCA
AGGCGCAGCTGGTCAGCGGCATCATGCAGCCGGTGATGTTCTTCATCTCGAACATCAACTACGTGCTGATCGCCGTGGTC
GGCGGCCTGCGGGTCGCTTCCGGCACCCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGGCAGTTCTCGAT
GCCGCTGACCCAGGTCGCGTCGATGGCGAACCTCGTGCAGTCCGGTGTCGCCTCGGCCGAGCGGGTCTACGAGCTGCTGG
ACGCTCCGGAGCAGGAGCGCGACGCCGACGTGCCGGAGCGTCCGCAGGAGCTGCGCGGCCAGGTCACCTTCGACAAGGTG
GCCTTCCGCTACGAGCCGGACCGGCCGCTCATCGAGAACCTGTCGCTCTCGGTGGAGCCGGGCCACACGGTCGCGATCGT
CGGCCCGACGGGTGCCGGCAAGACGACCCTGGTGAACCTGCTGATGCGGTTCTACGAGGTCACGGGCGGGGAGATCGCCC
TGGACGGGGTGGACATCGCCAAGATGACCCGCGAGGAGCTGCGCGGCGGCATCGGCATGGTGCTCCAGGACACCTGGCTG
TTCGGCGGCACGATCGCGCAGAACATCGCCTACGGTGCTTCGCGCGAGGTCACGCGCGCCGAGATCGAGGAGGCGGCGCG
GGCCGCGCACGCGGACCGGTTCATCCGGACCCTGCCGGACGGCTACGACACCGTGCTGGACGACGAGGGCGCGGGCGTCA
GCGCGGGCGAGAAGCAGCTGATCACCATCGCCCGGGCGTTCCTGTCGGACCCGGTGATCCTGGTCCTCGACGAGGCGACG
AGCTCGGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGCGGCTCGCGCACGGCCGTACGTCCTTCGTGAT
CGCGCACCGGCTCTCCACGATCCGCGACGCCGACCTGATCCTGGTGATGGAGAGCGGCTCGATCGTGGAGCAGGGCACGC
ACGAGGAGCTGCTGGCGTCGGGCGGCGCCTACGCGCGGCTGTACGCGGCGCAGTTCGCCCAGGCGGTCGCCGAGGTCGAC
TAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(412-561)

ABC transporter transmembrane region (ABC_membrane)

(56-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.871

97.188

0.387