Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   F1D59_RS23935 Genome accession   NZ_CP043638
Coordinates   5364601..5366334 (-) Length   577 a.a.
NCBI ID   WP_030657138.1    Uniprot ID   -
Organism   Streptomyces sp. INR7     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5359601..5371334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1D59_RS23915 (F1D59_24005) - 5360029..5360637 (-) 609 WP_030657146.1 hypothetical protein -
  F1D59_RS23920 (F1D59_24010) rpoS 5360789..5361841 (+) 1053 WP_030657144.1 RNA polymerase sigma factor Regulator
  F1D59_RS23925 (F1D59_24015) - 5361913..5362431 (-) 519 WP_053628273.1 GNAT family N-acetyltransferase -
  F1D59_RS23930 (F1D59_24020) rcrQ 5362682..5364604 (-) 1923 WP_030657140.1 ABC transporter ATP-binding protein Regulator
  F1D59_RS23935 (F1D59_24025) rcrP 5364601..5366334 (-) 1734 WP_030657138.1 ABC transporter ATP-binding protein Regulator
  F1D59_RS23940 (F1D59_24030) - 5366495..5367943 (-) 1449 WP_030657136.1 FGGY family carbohydrate kinase -
  F1D59_RS23945 (F1D59_24035) - 5368040..5368345 (-) 306 WP_030657134.1 hypothetical protein -
  F1D59_RS23965 (F1D59_24055) - 5369077..5370234 (-) 1158 WP_078658749.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62363.18 Da        Isoelectric Point: 4.8526

>NTDB_id=338482 F1D59_RS23935 WP_030657138.1 5364601..5366334(-) (rcrP) [Streptomyces sp. INR7]
MLIRLLRTHLGPYRKPIAALVLLQLLQTSASLYLPTLNADIIDNGVVNGDTGYILRFGALMLGVSLIQLVCNVGAVYYGA
RTAAAVGRDVRGAVFDRVQSFSARELGQFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIAMALSLDVQLSGV
LLAVVPVLGISVGAIVYRTRPLFRQMQDRLDTVNRVLREQITGNRVIRAFVRDDYEKDRFREANADLTGVSLASGKLLAL
MFPTVIVVVNISSVAVIWFGAMRVDSGGMEIGQLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTESSVVP
PADPVRELTRRGLLELRGADFGYPGAEAPVLRGVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGEVLVDGEDVR
RIDPELLAKTVGMVPQKPYLFSGTVASNLRYGRPDASDEELWQALEVAQAKEFVSALEGGLEAPVTQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETEDATVVIVAQRVATIRDADRIIVLDEGQVVGEGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=338482 F1D59_RS23935 WP_030657138.1 5364601..5366334(-) (rcrP) [Streptomyces sp. INR7]
GTGCTCATACGACTTCTGCGGACCCATCTGGGTCCGTACCGGAAACCCATCGCGGCGCTGGTCCTGCTGCAACTGCTGCA
GACCAGCGCCAGCCTCTACCTGCCCACCCTGAACGCCGACATCATCGACAACGGTGTCGTCAACGGCGACACCGGCTACA
TCCTGCGCTTCGGCGCGCTGATGCTCGGCGTGTCGCTCATCCAGCTCGTCTGCAACGTCGGGGCCGTCTACTACGGCGCC
CGCACGGCCGCGGCCGTCGGCCGCGACGTCCGCGGTGCCGTCTTCGACCGGGTGCAGAGCTTCTCCGCCCGGGAGCTCGG
CCAGTTCGGCGCCCCGTCGCTGATCACCCGTACGACGAACGACGTCCAGCAGGTCCAGATGCTGGTGCTGATGACCTTCA
CCCTGATGGTGTCGGCCCCGATCATGTGCGTCGGCGGCATCGCCATGGCGCTCTCGCTGGACGTACAGCTGTCGGGCGTC
CTGCTGGCCGTGGTCCCCGTGCTGGGGATCTCCGTCGGCGCCATCGTCTACAGGACGCGGCCGCTGTTCCGCCAGATGCA
GGACCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCCTTCGTCCGCGACG
ACTACGAGAAGGACCGCTTCCGCGAGGCCAACGCCGACCTGACCGGTGTCTCGCTGGCCTCGGGCAAGCTGCTGGCCCTG
ATGTTCCCGACCGTGATCGTGGTCGTGAACATCTCCAGCGTCGCCGTCATCTGGTTCGGTGCGATGCGCGTCGACAGCGG
CGGTATGGAGATCGGCCAGCTCACGGCCTTCCTCGCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCGGAGCGCATCCAGGAGGTGCTGGACACCGAGTCCAGCGTCGTCCCG
CCCGCCGACCCGGTGCGCGAACTCACCCGCCGCGGGCTCCTGGAGCTGCGCGGCGCCGACTTCGGCTATCCGGGTGCCGA
GGCCCCGGTCCTGCGCGGCGTGGACCTGGTGGCCCGCCCCGGCGAGACCACGGCGGTGATCGGCTCGACCGGAAGCGGGA
AGTCCACACTGCTGGGCCTGGTCCCCCGGCTGTTCGACGCGACCGGCGGCGAGGTGCTGGTCGACGGTGAGGACGTACGC
CGGATCGACCCCGAACTGCTGGCGAAGACGGTCGGCATGGTTCCGCAGAAGCCCTACCTGTTCTCCGGCACCGTCGCCTC
CAACCTGCGCTACGGGCGCCCGGACGCCAGCGACGAAGAGCTGTGGCAGGCCCTGGAAGTAGCCCAGGCCAAGGAGTTCG
TCTCGGCGCTGGAGGGCGGCCTGGAGGCCCCCGTCACCCAGGGCGGAACGAACGTCTCCGGTGGTCAGCGCCAGCGTCTG
GCCATCGCCCGCACGCTCGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCCCTGGACTACGCGACGGA
CGCGGCGCTGCGCGCGGCGCTCGCCCGCGAGACCGAGGACGCGACCGTGGTCATCGTCGCCCAGCGGGTCGCCACGATCC
GCGACGCCGACCGGATCATCGTCCTGGACGAGGGGCAGGTCGTGGGTGAGGGACGCCACCACGAGCTGATGGCCGGCAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCGGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.892

93.241

0.381

Multiple sequence alignment