Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   EQH20_RS09105 Genome accession   NZ_CP035260
Coordinates   1789429..1790382 (-) Length   317 a.a.
NCBI ID   WP_000345130.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901925     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1784429..1795382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH20_RS09080 (EQH20_09580) - 1785190..1785813 (-) 624 WP_000932660.1 hypothetical protein -
  EQH20_RS09085 (EQH20_09585) jag 1785864..1786850 (-) 987 WP_000260018.1 RNA-binding cell elongation regulator Jag/EloR -
  EQH20_RS09090 (EQH20_09590) - 1786869..1787693 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  EQH20_RS09095 (EQH20_09595) rnpA 1787668..1788039 (-) 372 WP_000739246.1 ribonuclease P protein component -
  EQH20_RS10235 - 1788056..1788187 (-) 132 WP_000768904.1 hypothetical protein -
  EQH20_RS09100 (EQH20_09600) - 1788188..1789378 (-) 1191 WP_000167766.1 acetate kinase -
  EQH20_RS09105 (EQH20_09605) comYH 1789429..1790382 (-) 954 WP_000345130.1 class I SAM-dependent methyltransferase Machinery gene
  EQH20_RS09110 (EQH20_09610) - 1790443..1791037 (-) 595 Protein_1784 class I SAM-dependent methyltransferase -
  EQH20_RS09115 (EQH20_09615) comGG/cglG 1791140..1791586 (-) 447 WP_061647526.1 competence type IV pilus minor pilin ComGG Machinery gene
  EQH20_RS09120 (EQH20_09620) comGF/cglF 1791564..1792025 (-) 462 WP_000250539.1 competence type IV pilus minor pilin ComGF Machinery gene
  EQH20_RS09125 (EQH20_09625) comGE/cglE 1791988..1792290 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  EQH20_RS09130 (EQH20_09630) comGD/cglD 1792253..1792657 (-) 405 WP_000588030.1 competence type IV pilus minor pilin ComGD Machinery gene
  EQH20_RS09135 (EQH20_09635) comGC/cglC 1792650..1792976 (-) 327 WP_000738625.1 competence type IV pilus major pilin ComGC Machinery gene
  EQH20_RS09140 (EQH20_09640) comGB/cglB 1792978..1793994 (-) 1017 WP_074017570.1 competence type IV pilus assembly protein ComGB Machinery gene
  EQH20_RS09145 (EQH20_09645) comGA/cglA/cilD 1793942..1794883 (-) 942 WP_000249552.1 competence type IV pilus ATPase ComGA Machinery gene
  EQH20_RS09150 (EQH20_09650) - 1794959..1795324 (-) 366 WP_000286415.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35642.89 Da        Isoelectric Point: 4.3259

>NTDB_id=338335 EQH20_RS09105 WP_000345130.1 1789429..1790382(-) (comYH) [Streptococcus pneumoniae strain TVO_1901925]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELNQVKDNNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLTKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SNLLKVWLKEEASLVAMISLPENLFANAKQSKTIFILQKKSEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=338335 EQH20_RS09105 WP_000345130.1 1789429..1790382(-) (comYH) [Streptococcus pneumoniae strain TVO_1901925]
ATGGATTTTGAAAAAATTGAACAAGCTTATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATCTGGATGGTGAAACTGAGCTAAACCAGGTCAAAGACAACAATC
AGGCCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACACCGGATGCTATTGCTTTACTTTTGGTGTTTATTGTGGAAGAGCTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTTTGGGCGCTACTTTCTTGACCTCGCTTACTAAAA
AGGTGGATTATTTGGGAATGGAAGTGGATGATTTGCTGATTGATTTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGTGATGTGGTCATCAGCGACTTGCCTGTTGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGTCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGACTTAAGTACCTCAAGTCAGACGGATACGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTAATTTGTTGAAAGTCTGGTTGAAAGAGGAGGCAAGTCTGGTTGCTATGATTAGTTTACCTGAAAATCTCTTTGCTAA
TGCTAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAGTGAAATAGCAGTAGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.952

98.738

0.543
  comYH Streptococcus mutans UA159

54.633

98.738

0.539

Multiple sequence alignment