Detailed information NTG0338336

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: F0316_RS00450
• Genome accession: NZ_CP043554
• Coordinates: 82037..83224 (+)
• Length: 395 a.a.
• NCBI ID: WP_076024892.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain RFB16
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 77037..88224

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F0316_RS00405 (F0316_00405)	-	77874..78344 (-)	471	WP_000224703.1	Dps family protein	-
F0316_RS00410 (F0316_00410)	-	78514..78843 (-)	330	WP_095465245.1	DUF2500 domain-containing protein	-
F0316_RS00415 (F0316_00415)	-	79048..79416 (+)	369	WP_001289435.1	DUF4145 domain-containing protein	-
F0316_RS00430 (F0316_00430)	-	79919..80191 (+)	273	WP_033837897.1	hypothetical protein	-
F0316_RS00435 (F0316_00435)	-	80292..80921 (+)	630	WP_000062272.1	lysoplasmalogenase	-
F0316_RS00440 (F0316_00440)	-	80971..81237 (-)	267	WP_000645840.1	DUF1145 domain-containing protein	-
F0316_RS00445 (F0316_00445)	rsmD	81234..81833 (-)	600	WP_001189767.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
F0316_RS00450 (F0316_00450)	pilA	82037..83224 (+)	1188	WP_076024892.1	signal recognition particle-docking protein FtsY	Machinery gene
F0316_RS00455 (F0316_00455)	ftsE	83273..83947 (+)	675	WP_000617864.1	cell division ATP-binding protein FtsE	-
F0316_RS00460 (F0316_00460)	ftsX	83937..84929 (+)	993	WP_000279340.1	permease-like cell division protein FtsX	-
F0316_RS00465 (F0316_00465)	rpoH	85099..85959 (+)	861	WP_000184359.1	RNA polymerase sigma factor RpoH	-
F0316_RS00470 (F0316_00470)	sthA	86162..87562 (-)	1401	WP_123163051.1	Si-specific NAD(P)(+) transhydrogenase	-

Sequence

Protein

• Length: 395 a.a.
• Molecular weight: 43206.88 Da
• Isoelectric Point: 4.4258

>NTDB_id=338336 F0316_RS00450 WP_076024892.1 82037..83224(+) (pilA) [Vibrio cholerae strain RFB16]
MTEKKKRGLLSWLGFGDEEKSQTTATDTQTQDEPQSQADVEAVAIQAETALTETETETETETETETETETETETATVEPA
RIVEQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLTAKASRQQLRD
GEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQV
WGERNQVPVIAQHTGADSASVIYDAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAG
TGQNAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEFIDALFSREE

Nucleotide

• Length: 1188 bp

>NTDB_id=338336 F0316_RS00450 WP_076024892.1 82037..83224(+) (pilA) [Vibrio cholerae strain RFB16]
ATGACGGAAAAAAAGAAGCGTGGCTTGTTGTCATGGCTTGGATTTGGTGACGAAGAGAAAAGCCAAACCACTGCAACGGA
TACTCAAACGCAGGATGAACCACAAAGCCAAGCCGATGTTGAAGCGGTAGCGATTCAAGCGGAAACTGCGTTAACAGAAA
CAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGCCACGGTTGAACCTGCA
CGTATTGTTGAACAAGAAAAACCGACCGAAAGTTTCTTTGCGCGTTTAAAGCGCAGTTTGAGTCGCACCAAAGCGAATAT
TGGCGCAGGCTTCTTTGGCCTGTTTAAAGGCAAAAAAATTGATGATGACCTGTTCGAAGAGCTCGAAGAACAACTGCTGA
TTGCCGATGTCGGCATGGATACGACCAGCAAAATCATCGCTAATTTGACCGCCAAAGCTTCTCGCCAGCAACTGCGTGAT
GGGGAAGCACTGTACGGTCTGCTGAAAGAAGAGATGGCCGAGATTCTCTCTCAGGTCGAGCAGCCATTGGTGATCGACAC
TGAGAAAAAACCTTACGTGATCTTGATGGTGGGCGTGAATGGGGTGGGTAAAACTACCACGATCGGTAAACTGGCTAAAC
AGTTCCAAGCGCAAGGCAAGAAAGTGATGTTGGCAGCGGGCGATACCTTCCGTGCTGCAGCGGTTGAGCAGTTGCAAGTG
TGGGGAGAGCGCAATCAAGTGCCTGTCATCGCTCAGCATACTGGCGCCGACAGTGCCTCCGTCATTTATGATGCGATTGA
AGCGGCGAAAGCGCGCGGGATTGACGTGGTGATTGCGGATACCGCAGGTCGTCTGCAAAACAAAAGTAACCTGATGGAAG
AGCTGCGCAAGATTGTGCGCGTGATGAAGAAGATTGATGACAGCGCGCCACATGAAATCATGTTGACGCTGGATGCGGGT
ACCGGACAAAACGCGATCAGTCAGGCCAAATTGTTTAGTGATGTAGCGCCCATCACGGGCATTACCTTAACTAAGCTTGA
TGGCACCGCTAAAGGTGGCGTGATTTTCGCGATTGCCGATCAATTCCAGATCCCAATCCGTTATATCGGTGTCGGCGAGA
AAATTGACGACTTACGTCCATTTGCAACACAAGAGTTTATCGACGCGCTATTTAGCCGCGAAGAATAA

Domains

Predicted by InterProScan.

• SRP54-type protein, GTPase domain (SRP54) (192-391)

• SRP54-type protein, helical bundle domain (SRP54_N) (111-172)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	49.706	86.076	0.428