Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   EQH20_RS00105 Genome accession   NZ_CP035260
Coordinates   21284..21520 (+) Length   78 a.a.
NCBI ID   WP_000939546.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901925     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 16284..26520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH20_RS00100 (EQH20_00100) - 20246..21019 (-) 774 Protein_14 transposase -
  EQH20_RS00105 (EQH20_00105) comW 21284..21520 (+) 237 WP_000939546.1 sigma(X)-activator ComW Regulator
  EQH20_RS00110 (EQH20_00110) - 21751..23037 (+) 1287 WP_001818679.1 adenylosuccinate synthase -
  EQH20_RS00115 (EQH20_00115) tadA 23238..23705 (+) 468 WP_000291874.1 tRNA adenosine(34) deaminase TadA -
  EQH20_RS00125 (EQH20_00125) - 23892..24335 (+) 444 WP_000701992.1 dUTP diphosphatase -
  EQH20_RS00130 (EQH20_00130) - 24337..24852 (+) 516 WP_001823418.1 histidine phosphatase family protein -
  EQH20_RS00135 (EQH20_00135) radA 24866..26227 (+) 1362 WP_078152438.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9686.14 Da        Isoelectric Point: 6.7051

>NTDB_id=338281 EQH20_RS00105 WP_000939546.1 21284..21520(+) (comW) [Streptococcus pneumoniae strain TVO_1901925]
MLQKIYEQMANFYDSIEEEYGPTFGDNFDWEHVHFKFLIYYLVRYGIGCRRDFIVYHYRVAYRLYLEKLVMNRGFISC

Nucleotide


Download         Length: 237 bp        

>NTDB_id=338281 EQH20_RS00105 WP_000939546.1 21284..21520(+) (comW) [Streptococcus pneumoniae strain TVO_1901925]
ATGTTACAAAAAATTTATGAGCAGATGGCTAATTTCTATGATAGTATTGAAGAAGAGTATGGTCCTACATTTGGTGATAA
TTTTGACTGGGAACATGTTCATTTTAAATTTTTAATTTATTATTTAGTGAGATATGGCATTGGTTGTCGTAGGGATTTTA
TCGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGGTAATGAATCGGGGTTTTATTTCTTGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus pneumoniae Rx1

98.718

100

0.987
  comW Streptococcus pneumoniae D39

98.718

100

0.987
  comW Streptococcus pneumoniae R6

98.718

100

0.987
  comW Streptococcus pneumoniae TIGR4

98.718

100

0.987
  comW Streptococcus mitis SK321

76.923

100

0.769
  comW Streptococcus mitis NCTC 12261

76.623

98.718

0.756

Multiple sequence alignment