Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   FTN78_RS10870 Genome accession   NZ_CP043523
Coordinates   2096671..2098671 (+) Length   666 a.a.
NCBI ID   WP_010906410.1    Uniprot ID   Q9CDH6
Organism   Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2091671..2103671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FTN78_RS10855 (FTN78_chr2168) - 2094307..2094828 (+) 522 WP_003131246.1 DUF536 domain-containing protein -
  FTN78_RS10860 (FTN78_chr2169) gap 2095108..2096118 (+) 1011 WP_003131244.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  FTN78_RS10865 (FTN78_chr2170) - 2096189..2096533 (+) 345 WP_010906411.1 zinc ribbon domain-containing protein YjdM -
  FTN78_RS10870 (FTN78_chr2171) recG/mmsA 2096671..2098671 (+) 2001 WP_010906410.1 ATP-dependent DNA helicase RecG Machinery gene
  FTN78_RS10875 (FTN78_chr2172) - 2098671..2099417 (+) 747 WP_010906409.1 hypothetical protein -
  FTN78_RS10880 (FTN78_chr2173) mnmE 2099468..2100835 (-) 1368 WP_003131240.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE -
  FTN78_RS10885 (FTN78_chr2174) - 2101047..2101682 (+) 636 WP_031296595.1 hypothetical protein -
  FTN78_RS10890 (FTN78_chr2175) - 2101778..2102506 (+) 729 WP_031296592.1 pseudouridine synthase -
  FTN78_RS10895 (FTN78_chr2176) - 2102585..2103199 (-) 615 WP_010906406.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 666 a.a.        Molecular weight: 74829.58 Da        Isoelectric Point: 5.9450

>NTDB_id=338056 FTN78_RS10870 WP_010906410.1 2096671..2098671(+) (recG/mmsA) [Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96]
MKLTDSVQFLKGVGPKSVENFHKLGIFTVQDLLLYFPFRYEDFASRSVFELVDGEKATIIGTVVTPANVQYYGFKRNRLS
FKIKEGEAVVAVSFFNQPYLADKVEVGKEIAVYGKWEQAKQQLMGMKVVAQVDDGLEPVYHLAAGMKQSQLVKVIHQVFE
SDLLSELPENLPEFLIKKYRLMNRQEAVLAMHFPEDMEAHKQALRRVKFEELFMFQLKLQALKNKEKSGRAGLEVVFEQG
EIDQKISELPFELTGAQLSALSEILTDMKSPYHMNRLLQGDVGSGKTVVASLAMYAACLANFQAAIMVPTEILARQHFAN
LKALFPELQISLLVSGLKVAERREILADLVSGHTHMVVGTHALIQEGVNFYNLGLVITDEQHRFGVNQRKILREKGQNPD
VLMMTATPIPRTLAITAFGDMDVSIIDELPKGRQPITTRWVKHEQFSEVLSWIKAEVAKDSQVYFISPLIEESETLDLKN
AEALFAELNEYFGLFAKIGLLHGKMKNDEKDQIMQEFKAKKLDILVSTTVIEVGVDVPNATIMVIMDADRFGLSQLHQLR
GRVGRGTKKSYAILVANPKSDSGKQRMKIMTETQNGFILAEEDLKMRGSGEIFGLRQSGLPEFIAADLVNDYNILEVARK
EAVEIFKNADEFPDLIAQVNVDGGFD

Nucleotide


Download         Length: 2001 bp        

>NTDB_id=338056 FTN78_RS10870 WP_010906410.1 2096671..2098671(+) (recG/mmsA) [Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96]
ATGAAATTAACAGATTCAGTGCAATTTTTAAAAGGTGTGGGACCGAAATCTGTGGAAAATTTCCATAAGTTAGGAATTTT
CACGGTTCAAGATTTATTGCTTTATTTCCCTTTTCGTTATGAAGATTTCGCAAGTCGTTCGGTTTTTGAACTTGTTGACG
GAGAAAAAGCAACAATTATTGGAACGGTAGTGACACCAGCTAATGTCCAGTATTACGGATTTAAACGTAATCGACTTTCA
TTTAAAATTAAAGAAGGTGAGGCCGTGGTTGCTGTCAGCTTTTTTAATCAACCTTATTTGGCTGACAAAGTGGAAGTTGG
TAAGGAAATTGCAGTTTACGGAAAATGGGAGCAGGCAAAGCAACAACTGATGGGGATGAAGGTTGTGGCTCAGGTGGACG
ATGGCTTAGAACCTGTTTATCATTTGGCAGCGGGTATGAAACAAAGTCAATTGGTCAAAGTAATTCATCAGGTTTTTGAA
TCAGACCTTCTATCAGAATTACCTGAGAACTTACCAGAATTTTTGATTAAAAAATATCGTCTGATGAACCGGCAAGAAGC
CGTTTTGGCTATGCATTTTCCTGAAGATATGGAAGCTCATAAGCAGGCTTTACGTCGTGTAAAATTTGAAGAATTATTCA
TGTTTCAGTTGAAATTACAGGCCTTAAAAAATAAAGAAAAATCAGGCCGAGCAGGATTAGAAGTTGTTTTTGAGCAAGGA
GAAATTGATCAGAAGATTTCTGAATTACCTTTTGAACTGACAGGTGCTCAATTAAGCGCTTTGTCAGAGATTCTGACGGA
TATGAAATCTCCTTATCACATGAATCGACTTTTGCAAGGTGATGTGGGTTCTGGTAAAACAGTTGTTGCTTCCCTTGCCA
TGTACGCGGCTTGTTTGGCGAATTTTCAAGCAGCAATTATGGTACCAACGGAAATCCTTGCCCGTCAGCATTTTGCAAAC
TTGAAAGCTCTTTTTCCAGAATTGCAAATTTCACTTTTGGTTTCGGGTTTGAAAGTGGCAGAGCGCCGCGAGATTTTGGC
TGATTTAGTTAGTGGTCATACACATATGGTAGTTGGAACTCATGCGCTAATTCAAGAAGGGGTTAATTTTTATAATTTGG
GTTTGGTGATTACAGACGAACAACACCGTTTCGGAGTCAATCAACGAAAAATTTTACGAGAAAAAGGGCAAAATCCAGAT
GTTCTAATGATGACAGCTACACCCATTCCAAGAACGCTTGCGATTACGGCTTTTGGGGATATGGATGTTTCAATTATTGA
TGAACTACCCAAGGGACGTCAACCCATTACTACAAGGTGGGTCAAACATGAACAATTTTCCGAAGTTTTAAGTTGGATAA
AAGCAGAGGTTGCTAAAGATTCACAGGTTTATTTTATTTCACCTTTAATTGAGGAAAGTGAAACGTTGGACCTGAAAAAC
GCAGAAGCTCTTTTTGCGGAATTAAATGAATACTTTGGATTATTTGCCAAAATTGGTCTTTTACATGGAAAAATGAAAAA
TGATGAAAAAGACCAAATCATGCAAGAATTTAAGGCTAAAAAATTAGATATTTTGGTTTCAACAACAGTGATTGAAGTGG
GAGTTGACGTTCCTAATGCTACCATTATGGTGATTATGGATGCTGACCGCTTTGGACTTTCGCAGCTTCACCAATTGCGT
GGTCGTGTTGGTCGGGGAACAAAAAAATCTTATGCCATTTTAGTAGCAAATCCTAAGTCCGATTCAGGAAAACAACGGAT
GAAAATTATGACAGAAACACAAAATGGTTTTATTTTAGCCGAAGAAGATTTGAAAATGCGTGGTTCTGGAGAGATTTTTG
GACTTCGTCAGTCAGGACTTCCAGAATTTATTGCGGCTGATTTAGTCAATGATTATAATATTTTAGAAGTGGCTAGAAAA
GAAGCAGTTGAAATTTTTAAAAATGCAGATGAGTTTCCTGATTTGATTGCTCAAGTTAATGTTGACGGGGGCTTTGATTG
A

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(7-157)

Helicase conserved C-terminal domain (Helicase_C)

(456-566)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-651)

DEAD/DEAH box helicase (DEAD)

(257-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CDH6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

66.202

96.847

0.641
  recG/mmsA Streptococcus pneumoniae R36A

66.202

96.847

0.641
  recG Bacillus subtilis subsp. subtilis str. 168

50.698

96.847

0.491
  recG Neisseria meningitidis strain C311

40.181

99.399

0.399